Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09727 ATGTGTACCAATGTTTGTGATAATACATTGCATTGCATGCCACCTAATTTAATTTCCCTTATGGCATCCACCCTTGATAATGATCACCACCAACTGAACCGCTTCTCTGATGTCGGAAACAAGGTTGCCGATGCCGCCGGACAAGTTATTCGCAAATATTTCAGGAACAAGTTTGATATTCTTCACAAAGATGATCTCAGCCCAGTAACAATTGCGGATCAATCAGCTGAGGAGTTCATGGTTTCAATCATATCAGAGAATTTCCCTTCTCATGCAATTTATGGAGAGGAATATGGGTGGAGGTGTAAAGAAAAGAGTGCAGAATATGTTTGGGTTTTAGATCCTATAGATGGGACAAAGATCTTTATCACTGGGAAACCCTTATTTGGTACACTCATTGCTCTTCTACAAAATGGTAGACCGATCCTTGGCATAATTGATCAACCAGTTTTGAGAGAAAGATGGATTGGAGTTGCTGGAAAGAGAACTACACTGAATGGACAAGAAGTGTCCACACGCATTTGTACAAACCTTTCTCAAGCTTACTTGTACACCACAAGTCCACATCTATTCACTGGAGATGCAGAAGAGGCATTCTTCCGTGTCAGAAGCAAGGTTAAGACTCCATTGTATGGTTGTGACTGCTATGCTTATGCTCTTTTGGCTTCTGGATTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGACTTTCTAGCATTGATCCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGACATCAACTCTCTTGGGAAGCTTCTCCATTTTCACCTGCAAAAATTTCAGCAGGCCCTGCTTCTAACTTCATTCCTAAAGATAACTTCCTCATTGATTGTGGTGCAGAAAATGTAGCCACCCTCCCTGATGGAAGACAATTCAAATCAGACCCACAAGCCAATTCTTTCTTGCAAGCCAATGATGATTATAAAGTCTCAGCTAATGATGTGGATGTTCCTTCTCCTATTTACTCAAATGCAAGGATATTCATTCAGGAAGCTAAGTACTCCTTCCATTTGGTTCAACCAGGATTTCATTGGGTTCGCCTTCATTTCTTCCCTATTAAAAACAGTGTTTTTGATCTTCAAAAGGCCACTTTCTCTGTCAACACAGATAAATTTGTCCTTCTTCACAGCTTCAATGTTAACAACACTGAAAAGGCAATCCTCAAGGAGTACCTTATCAATGCAACTGAACCCCATTTCACCTTATCCTTCATTCCCTTGAAAAACTCAGCTGCATTCATCAATGCCATTGAACTTGTTTCAGCTCCTGATAACCTCATCTTTGATAGTGGTGCCAGCCTTTTCCCTGTTGGAGAGTTTTCTGGCCTTACAGCTTATGGTTTCCAACCTGTTTATAGGCTCAACAATGGAGGACCTGTGATCACCCCATCAAATGACACATTGGCAAGAACTTGGGAATCTGATGAGCCTTACCTCACAAACAAGAACTTGGCAAAAGGTGTCTCAGTGGCTACCACTGCCATTAAGTTCCCCCAAGACACACCAACAATTTCTCCTCTTATTGCACCACAAACAGTGTATGCTTCTGCCACTGAAATGGGTGATGCTGGTGTCAACCAGCCAAATTTCAATGTCTCATGGAAATTTGATGTGGACACTTCTTTTAGTTACTTCATTAGATTGCATTTCTGTGACATTGTAAGCAAAGGGCTTAATGAACTCTACTTCAATGTCTATGTTAATGGGAAAATGGCAATTTCTAACTTGGATTTGTCAGCTATTACTGGTGCCTTGTCAACCCCATATTACAAAGACATTGTAGTCAATGCAACATTGATGTCTCAAGGACTAACAGTTCAGGTTGGTCCAGCAAATGCTGATGGTGGAAATGCCAATGCCATTATGAATGGTATAGAGGTCTTGAAGATAAGCAACTCTGTGGATAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAGGATTGGTGGTTCTAACCGTGGGACAGTGGCAGCAGTTGGATTTGCCATGATGTTTGGAGCTTTTGTGGGACTTGGTGCTATGGTGATCAAGTGGCACAAGAGGCCACAAGACTGGCAAAAGAGGAACAGCTTCTCTTCATGGTTACTTCCTTTACATGCTGGTGATACAAGCTTCATGAGCAGCAAAACCTCAATGGGAAAGAGCAACATCTACTCCTCATCAATGGGATTAGGAAGGTTTTTCTCCTTTGCAGAATTACAAGAAGCAACCAAAAACTTTGATTCCAAGAACATTATTGGTGTTGGTGGATTTGGTAATGTCTATTTGGGTGTGATTGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAATCCACAATCAGAACAAGGAATCAATGAATTCCAAACTGAAATTCAAATGTTATCCAAACTTAGACACAGGCATTTGGTGTCTTTGATTGGATACTGTGATGAGAATGAAGAGATGATCCTTGTTTATGAGTACATGCCTAATGGACATTTCAGAGACCATCTTTATGGAAAGAACTTGCCATCACTTTCTTGGAAGCAAAGGTTAGAGATTTGCATTGGATCAGCTCGTGGTCTTCACTACCTTCACACAGGAACTACACAAGGTATCATCCACCGTGATGTTAAGACCACAAACATCTTACTTGATGAGAATTTCACAGCCAAAGTTTCTGACTTTGGACTTTCAAAGGATGCACCTATGGGTCAGGGTCATGTTAGTACAGCAGTGAAAGGTAGTTTTGGTTATCTTGACCCTGAATACTTCAGGAGACAACAATTGACAGAAAAATCAGATGTATACTCATTTGGGGTGGTCCTTCTTGAAGCACTATGTGCAAGGCCAGCTATTAACCCTCAGTTGCCTAGAGAACAAGTAAACTTGGCTGATTGGGCAATGCAATGGAAGAGAAAAGGGTTGCTTGATAAGATCATTGATCCTCTTCTTGTTGGTTCAATCAACCCTGAATCTATGAAGAAATTTGCTGAGGCTGCTGAGAAATGTTTGGCTGATCATGGTGTTGATAGGCCTTCAATGGGAGATGTACTTTGGAACTTGGAATATGCATTGCAGCTTCAAGAAGCATTCACACAAGGTAAGGCAGAGGATGAGATTAAGTCAACTGCAGCTGTTCCTACTTCACCTGCTCCAGTTCCAACACCTTCCTCTACCTCTGATGACACCCCAGTTTCACGTCCAGAAGTGAATAATAATAATAATAGTCCACCAGAAGTGCATGCTATTGATGACCATTCTGGAACTGCAATGTTTGCACAGTTTAATAATCTTAATGGCAGGTGA 3309 0.4149 MCTNVCDNTLHCMPPNLISLMASTLDNDHHQLNRFSDVGNKVADAAGQVIRKYFRNKFDILHKDDLSPVTIADQSAEEFMVSIISENFPSHAIYGEEYGWRCKEKSAEYVWVLDPIDGTKIFITGKPLFGTLIALLQNGRPILGIIDQPVLRERWIGVAGKRTTLNGQEVSTRICTNLSQAYLYTTSPHLFTGDAEEAFFRVRSKVKTPLYGCDCYAYALLASGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGHQLSWEASPFSPAKISAGPASNFIPKDNFLIDCGAENVATLPDGRQFKSDPQANSFLQANDDYKVSANDVDVPSPIYSNARIFIQEAKYSFHLVQPGFHWVRLHFFPIKNSVFDLQKATFSVNTDKFVLLHSFNVNNTEKAILKEYLINATEPHFTLSFIPLKNSAAFINAIELVSAPDNLIFDSGASLFPVGEFSGLTAYGFQPVYRLNNGGPVITPSNDTLARTWESDEPYLTNKNLAKGVSVATTAIKFPQDTPTISPLIAPQTVYASATEMGDAGVNQPNFNVSWKFDVDTSFSYFIRLHFCDIVSKGLNELYFNVYVNGKMAISNLDLSAITGALSTPYYKDIVVNATLMSQGLTVQVGPANADGGNANAIMNGIEVLKISNSVDSLDGEFGVDGRRIGGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKTSMGKSNIYSSSMGLGRFFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENEEMILVYEYMPNGHFRDHLYGKNLPSLSWKQRLEICIGSARGLHYLHTGTTQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPLLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDEIKSTAAVPTSPAPVPTPSSTSDDTPVSRPEVNNNNNSPPEVHAIDDHSGTAMFAQFNNLNGR. 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09727 1102 ProSitePatterns Inositol monophosphatase family signature 1. 111 124 IPR020583 -
Seca3g09727 1102 FunFam Inositol monophosphatase 171 280 - -
Seca3g09727 1102 Pfam Malectin-like domain 289 642 IPR024788 -
Seca3g09727 1102 Gene3D Phosphorylase Kinase; domain 1 716 828 - -
Seca3g09727 1102 Gene3D - 20 170 - -
Seca3g09727 1102 FunFam Receptor-like protein kinase FERONIA 460 645 - -
Seca3g09727 1102 FunFam Receptor-like protein kinase FERONIA 829 1042 - -
Seca3g09727 1102 CDD STKc_IRAK 759 1023 - -
Seca3g09727 1102 MobiDBLite consensus disorder prediction 1056 1081 - -
Seca3g09727 1102 PANTHER OS07G0166700 PROTEIN 739 1029 IPR045272 GO:0004714|GO:0006468
Seca3g09727 1102 Pfam Inositol monophosphatase family 40 263 IPR000760 -
Seca3g09727 1102 Gene3D Transferase(Phosphotransferase) domain 1 829 1047 - -
Seca3g09727 1102 NCBIfam histidinol-phosphatase 38 262 IPR011809 GO:0004401
Seca3g09727 1102 SUPERFAMILY Carbohydrate phosphatase 38 266 - -
Seca3g09727 1102 ProSitePatterns Protein kinases ATP-binding region signature. 759 781 IPR017441 GO:0005524
Seca3g09727 1102 PRINTS Inositol monophosphatase superfamily signature 89 105 IPR000760 -
Seca3g09727 1102 PRINTS Inositol monophosphatase superfamily signature 234 258 IPR000760 -
Seca3g09727 1102 PRINTS Inositol monophosphatase superfamily signature 67 87 IPR000760 -
Seca3g09727 1102 PRINTS Inositol monophosphatase superfamily signature 111 127 IPR000760 -
Seca3g09727 1102 PRINTS Inositol monophosphatase superfamily signature 160 183 IPR000760 -
Seca3g09727 1102 SUPERFAMILY Protein kinase-like (PK-like) 736 1020 IPR011009 -
Seca3g09727 1102 FunFam Putative receptor-like protein kinase 286 436 - -
Seca3g09727 1102 Gene3D - 171 279 - -
Seca3g09727 1102 Pfam Protein tyrosine and serine/threonine kinase 756 950 IPR001245 GO:0004672|GO:0006468
Seca3g09727 1102 MobiDBLite consensus disorder prediction 1037 1088 - -
Seca3g09727 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 873 885 IPR008271 GO:0004672|GO:0006468
Seca3g09727 1102 Gene3D - 286 436 - -
Seca3g09727 1102 Gene3D - 462 645 - -
Seca3g09727 1102 SMART serkin_6 753 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09727 1102 FunFam Inositol monophosphatase 22 170 - -
Seca3g09727 1102 FunFam receptor-like protein kinase FERONIA 716 828 - -
Seca3g09727 1102 ProSiteProfiles Protein kinase domain profile. 753 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09727 1102 CDD Bacterial_IMPase_like_1 35 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09727 Seca-Chr3 239517693 239527156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09727 279 1102 Receptor kinase-like Gene Family AT4G39110 68.459 0.0 1185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca3g09727 Malectin_like 1.8e-35 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09727 - - gmx:100790759 1471.83