Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09712 ATGGTCTCAAGAAGCGAATATTTGAATAGGCTTGTCTTTCAGAGTGGAAGCAACAGAGGAAGTAAGGGTGATAGCCTCAACATCCAAATAAAAAACCTTCCAGGTGGTACCAAAACTTTTGAATTAGTAGTCAAATTCTGTTATGGATGGAAAATTGATTTAACCTCAGCCAGCATTGCCCCATTATATTCCGTTGCACATTTCTTGGAAATGAGTGAAGATCTTGAAGAAGGAAATCTCATTTCGAAGACAGAATCTTTTCTGAGCTTTCTGATATTTTCTTCATGGAAAAACACATTTAGAATACTTAAAACCTGTGAATCCATTTCCTCTTGGGCCAATGAGTTACAAATAACTAAATGCTGCTCAGAAGCAATAGCTTGGAAAGCATGTGCAAACCCAAATGCATCTAGTTGTGAAAATGCAAGACAATTCAATGTGTAA 444 0.3671 MVSRSEYLNRLVFQSGSNRGSKGDSLNIQIKNLPGGTKTFELVVKFCYGWKIDLTSASIAPLYSVAHFLEMSEDLEEGNLISKTESFLSFLIFSSWKNTFRILKTCESISSWANELQITKCCSEAIAWKACANPNASSCENARQFNV. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09712 147 PANTHER OS12G0117600 PROTEIN 1 132 IPR043454 -
Seca3g09712 147 Gene3D Potassium Channel Kv1.1; Chain A 1 143 IPR011333 -
Seca3g09712 147 Pfam BTB/POZ domain 2 73 IPR000210 GO:0005515
Seca3g09712 147 SUPERFAMILY POZ domain 2 73 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09712 Seca-Chr3 239347046 239347489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09712 1 137 EF-hand Containing Proteins AT2G47860 38.686 1.89e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca3g09712 BTB 0.00041 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09712 - - lang:109335968 231.106