Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09695 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTTCCCTTCATCACCAACAAGGCCAACCCATTTCAACTGACCACCATGCCAACCTTCCTTTGCCTTCATCAGCTGCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACTGCCACTCCCTGTGTTCCACATAACAGTGGTGTTGATCAAGACTGTGACAACAACCCCAACTACTGGAACCTCAAGATGTGTCCACCACAAGTGAATTCAGACAGAAAAGGAATAATGATCAACATGGAAGATGATGAAAATAGCAAACACATGATGGGGTGTGAAGAAAATGGTGTCTATGGAAGTGACTTCAGGGTGTGTCAGGATTGTGGAAACAGGGCAAAGAAAGATTGCAGTTTCAAAAGATGCAGAACATGTTGTAAAGGACGTGGCTTTAATTGCAACACTCACGTGAAGAGCACGTGGGTCCCGGTATCACTGAGGCGTGACCGGAATATGGCGGTGGCTGATGGTGGTGGTGACAGTGATGGTGGTACTGGTGCTTCTTCTGGAGCTAAGAGACTAAGGGCTTTAGGGTCATCACAGAATGCTGCTGCAACTTCTCACAGTTCAACCTCTAATGCTACCACAACAAGAAGCTTAAGCTTAGATACTAGCTCCTGTCACCAAGATGCTGGTTTCAAACAGTCTTTGCCACGTCATGTTCGTGCACCTGCTGTGTTTAAGTGCCATAGAGTGAGTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCCACTGTTCATATTAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCAAGGTGTGGATAGGAAAAAGCTGCAACTGGGGAACAGTGGCAGTGGTAAGAGTAATAATAGGGAATGTTCTCCTGCAATTGGGGTTCCTACTAGTGCCTACCCTGCTTCTGCTTGCTGA 948 0.4652 MSMLGLRDLVLIAPTPSSLHHQQGQPISTDHHANLPLPSSAALSVGLGIFPLLTATPCVPHNSGVDQDCDNNPNYWNLKMCPPQVNSDRKGIMINMEDDENSKHMMGCEENGVYGSDFRVCQDCGNRAKKDCSFKRCRTCCKGRGFNCNTHVKSTWVPVSLRRDRNMAVADGGGDSDGGTGASSGAKRLRALGSSQNAAATSHSSTSNATTTRSLSLDTSSCHQDAGFKQSLPRHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDQGVDRKKLQLGNSGSGKSNNRECSPAIGVPTSAYPASAC. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09695 315 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 88 288 IPR007818 GO:0003700|GO:0006355
Seca3g09695 315 Pfam Domain of unknown function (DUF702) 120 280 - -
Seca3g09695 315 MobiDBLite consensus disorder prediction 167 186 - -
Seca3g09695 315 MobiDBLite consensus disorder prediction 192 211 - -
Seca3g09695 315 NCBIfam putative zinc finger domain, LRP1 type 120 160 IPR006510 -
Seca3g09695 315 NCBIfam LRP1 C-terminal domain 232 279 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09695 Seca-Chr3 239101997 239103383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09695 1 310 C2H2 Transcription Factor Family AT5G12330 40.062 5.75e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca3g09695 DUF702 1.2e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09695 - - gmx:100777812 409.068