Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09680 ATGTACGAGAAAAGCTATATACGCATCGTGATGTGGTTGCAAGAGGCTATCTGGTTAGAATGCACACAAGAAGCATGTGAAATCATATTTGTTCCTAGCGGATGGTATCATCAAGTTCATAATTTGCTGCAACTTTTCATCTTCAGTTTGGAACTCATAATTGTTGTACCATATTTGGCAGAAGAAGACATGGAATTTTCTGGGCTACTGAATGTTGCTGAGAAAACCTCTGGTCTATTCTTCTCATATGAAACTAATTTAACTCTGAGGTGA 273 0.3773 MYEKSYIRIVMWLQEAIWLECTQEACEIIFVPSGWYHQVHNLLQLFIFSLELIIVVPYLAEEDMEFSGLLNVAEKTSGLFFSYETNLTLR. 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09680 90 Gene3D Cupin 3 50 - -
Seca3g09680 90 SUPERFAMILY Clavaminate synthase-like 16 42 - -
Seca3g09680 90 Pfam JmjC domain, hydroxylase 17 42 IPR003347 -
Seca3g09680 90 ProSiteProfiles JmjC domain profile. 1 73 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09680 Seca-Chr3 238906061 238911310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09680 63 89 Acyl Lipid Metabolism Gene Families AT3G51460 74.074 2.85e-07 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca3g09680 JmjC 3.7e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09680 - - aew:130750267 62.003