Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09678 ATGGGTATGGCTGCAGAGACCCAGTTCCATGTTTTGGCTGTTGATGACAGTCTTATTGACAGAATGTTGATTGAGAGGCTCCTAAAAACCTCTTCCTTTCATGTTACTGCAGTGGACTCTGCCAGTAAGGCCTTAAAATTTCTTGGTTTGGTTGAAGATGAGTTGAGGACTTTTGACACTCATGTTGTTGCTTCAGAAATTCATCAGGTCCAAGATGTAGATGTAAACCTGATCATAACAGATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAGACATACCAGTTGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATCAACAGATGCTTGGAAGAGGGAGCTGAAGAATTCTTCCTGAAACCAGTTCAACAGTCAGATGTAAACAAGCTCAAGCCCCATTTGTTGAAATCAAGGGTCAAGGAAGAGCAAGACCAACCCATCAACAACAAAAGGAAGGGCATGGAAGAAAGCCACTCCCCAGATAAAACCAGATTAAAATGCAGTATTTAA 549 0.408 MGMAAETQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSASKALKFLGLVEDELRTFDTHVVASEIHQVQDVDVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKSRVKEEQDQPINNKRKGMEESHSPDKTRLKCSI. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09678 182 Gene3D - 10 178 - -
Seca3g09678 182 ProSiteProfiles Response regulatory domain profile. 10 148 IPR001789 GO:0000160
Seca3g09678 182 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 165 IPR045279 GO:0009736
Seca3g09678 182 CDD REC_typeA_ARR 11 143 - -
Seca3g09678 182 Pfam Response regulator receiver domain 11 140 IPR001789 GO:0000160
Seca3g09678 182 SUPERFAMILY CheY-like 8 151 IPR011006 -
Seca3g09678 182 SMART REC_2 9 147 IPR001789 GO:0000160
Seca3g09678 182 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09678 Seca-Chr3 238864678 238866352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09678 1 177 Response Regulator Gene Family AT3G57040 52.838 1.18e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g09678 Response_reg 3.4e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09678 K14492 - gmx:100787436 307.375