Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09673 ATGCTTAGTGCTGAAACTCCATTGTTGATGGGAAAAGCATGTGAGATTTTCATTCAGGAGCTCGCCTATCGTGCTTGGATGCATGCTGAGGAGGCTAATAAACGCACATTACAACCTCATGATGTTGCCAAGACCATTATGCAAACTGATGTCTTTGAGTTCTTGACTGATGTTCTTCCAAATGAACTCATACATTACCATGCTTATGGTGGCAAGGTCTCTTTTTTTTTTCATTTTCTTTAA 243 0.3951 MLSAETPLLMGKACEIFIQELAYRAWMHAEEANKRTLQPHDVAKTIMQTDVFEFLTDVLPNELIHYHAYGGKVSFFFHFL. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09673 80 Pfam Core histone H2A/H2B/H3/H4 1 45 IPR007125 GO:0003677
Seca3g09673 80 Gene3D Histone, subunit A 1 63 IPR009072 GO:0046982
Seca3g09673 80 SUPERFAMILY Histone-fold 1 61 IPR009072 GO:0046982
Seca3g09673 80 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09673 Seca-Chr3 238789645 238789887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09673 1 64 CCAAT-HAP5 Transcription Factor Family AT5G63470 56.250 1.14e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g09673 Histone 5.4e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09673 - - gsj:114370134 102.064