Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09665 ATGAGGGGTCGAGTGAAGAAGATAATGACTCTGGACAAGGACGTCCAGAGGGTGAGCTCAGAAGCGTTGTTTCTGGTGTCGCGCTCCACAAAGCTTTTCCTCCAATTACTGGCTAAAAAGTCTGCGGAGGTTGCCATTGAGAAGAAACGCAAGACCATGAAGCTTGAACACATAAGAACCGATGTGAAAAAGCACCAGCCAACCAGGGATTTCCTCCTTGATTCGCTTCCGATGCCTTCTCAACCACTTGCAATCGGTGCAGGGCCCATTGCTAAGTTTTTCCGCAACTGCCCAGATAATGCATTTCAGGTTGCCACATTCCTTATTACAGAGGATTTGTGCAATTGCTGCATTTTGGGACCTCTCCACCGCCTTGGTCTGTGA 384 0.487 MRGRVKKIMTLDKDVQRVSSEALFLVSRSTKLFLQLLAKKSAEVAIEKKRKTMKLEHIRTDVKKHQPTRDFLLDSLPMPSQPLAIGAGPIAKFFRNCPDNAFQVATFLITEDLCNCCILGPLHRLGL. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09665 127 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 78 - -
Seca3g09665 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 3 59 IPR003958 -
Seca3g09665 127 SUPERFAMILY Histone-fold 9 77 IPR009072 GO:0046982
Seca3g09665 127 Gene3D Histone, subunit A 2 78 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09665 Seca-Chr3 238688383 238688766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09665 3 83 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.198 3.14e-33 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g09665 CBFD_NFYB_HMF 1.4e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09665 - - ccaj:109814845 135.191