Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09659 ATGCCACCGGAGGAACTCGCAGCAGACCACGGAAGCAGTGAAATTTCCGATACAAAGATGGATGATTCATGGGAGAGTATTGAAAGGCCTATTTTCAGAGATATTAGACGCTATTTCTGTCAATACTGTGGCATTTGCAGGTCCAAGAAGACCCTAATTACCAATCACATCAATTCTCTTCACAAGGAGGAGATGGAAAAAGAAGGAATCCAAAGGGATCAAGAAACAGAGGGTATTAAATTGAATACTTGTAAGGAATGTGGTGCTAGTTTCAAAAAACCTGCCTACCTGTTGCAGCATATGCAAAGCCATTCGCTTGAGGTAGGGAGACCTCTTGAGAAGCTCCATCAAGGGTGCCTCAGTCACGCTCTGTTCAAAATGAGTATTGATGATTGTCAAGCAAGTTACAGAAGAAAGGATCACTTGACTCGTCATCTTCTACAGCATGAAGGGAAAATTTTTAAGTGTCCAATTGAGAATTGCAGCCGTGACTTTGCTTTCAAGGGAAACATGACAAGACATGTCAAGGAGTTCCATAGCAAAGATTCTACCTTGACTGGTTTTAAAGGTCAGAAGCAGTATTTGTGCCCAGAAATTGGCTGTGGGAAGGTTTTCAAATTTGCATCAAAGCTACAGAAGCACAAAGATTCTCATGTTAAGCTGGAGTCAGTAGAGGTAGTGTGCTTATATCCTGGGTGTATGAAGCATTTTACTAATGTCCAGTGCCTTAGAGCACACACTAAATCTTGCCATCAATATGTGACCTGTGAAACTTGTGGGAAAAAGCAACTGAAGAATAACATTAAAAGGCACCTTCGTAAGCACAAAAATGGTAGTTCATCAGAGGTGTTTCCTTGTGAATATAAGGGTTGTAGCTGCACATTGTCAAGTAAATCCAATCTTCATAAGCATGTCAAGGCTGTGCACTTGCAAGATAAACCTTTCATGTGTGGCTTTCCCGATTGTGGCATGAGATTTGCTTATAAACATGTAAGAGATAACCATGAAAAATCCGGTTCACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGACAAGGGGAGGGAGGAAGAGAAAGTACCCCACAGTTGAAATGTTAGTTAGGAAGAGAGTTGCTCCACCAAGTCAACTGGAGTTGCTCATGAAGGGTATTGAGTAG 1179 0.4148 MPPEELAADHGSSEISDTKMDDSWESIERPIFRDIRRYFCQYCGICRSKKTLITNHINSLHKEEMEKEGIQRDQETEGIKLNTCKECGASFKKPAYLLQHMQSHSLEVGRPLEKLHQGCLSHALFKMSIDDCQASYRRKDHLTRHLLQHEGKIFKCPIENCSRDFAFKGNMTRHVKEFHSKDSTLTGFKGQKQYLCPEIGCGKVFKFASKLQKHKDSHVKLESVEVVCLYPGCMKHFTNVQCLRAHTKSCHQYVTCETCGKKQLKNNIKRHLRKHKNGSSSEVFPCEYKGCSCTLSSKSNLHKHVKAVHLQDKPFMCGFPDCGMRFAYKHVRDNHEKSGSHVFTLGDFEEADEQFRSRTRGGRKRKYPTVEMLVRKRVAPPSQLELLMKGIE. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09659 392 PANTHER ZINC FINGER PROTEIN 17 385 - -
Seca3g09659 392 ProSitePatterns Zinc finger C2H2 type domain signature. 228 251 IPR013087 -
Seca3g09659 392 Gene3D Classic Zinc Finger 126 183 - -
Seca3g09659 392 ProSitePatterns Zinc finger C2H2 type domain signature. 317 341 IPR013087 -
Seca3g09659 392 Gene3D Classic Zinc Finger 184 253 - -
Seca3g09659 392 Gene3D Classic Zinc Finger 9 109 - -
Seca3g09659 392 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Seca3g09659 392 ProSitePatterns Zinc finger C2H2 type domain signature. 286 309 IPR013087 -
Seca3g09659 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 223 IPR013087 -
Seca3g09659 392 SUPERFAMILY beta-beta-alpha zinc fingers 135 182 IPR036236 -
Seca3g09659 392 SUPERFAMILY beta-beta-alpha zinc fingers 265 323 IPR036236 -
Seca3g09659 392 Gene3D Classic Zinc Finger 279 344 - -
Seca3g09659 392 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g09659 392 SUPERFAMILY beta-beta-alpha zinc fingers 190 220 IPR036236 -
Seca3g09659 392 FunFam Zinc finger 45-like 78 105 - -
Seca3g09659 392 ProSitePatterns Zinc finger C2H2 type domain signature. 196 218 IPR013087 -
Seca3g09659 392 ProSitePatterns Zinc finger C2H2 type domain signature. 156 179 IPR013087 -
Seca3g09659 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 184 IPR013087 -
Seca3g09659 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Seca3g09659 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 314 IPR013087 -
Seca3g09659 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 66 IPR013087 -
Seca3g09659 392 SMART c2h2final6 226 251 IPR013087 -
Seca3g09659 392 SMART c2h2final6 315 341 IPR013087 -
Seca3g09659 392 SMART c2h2final6 154 179 IPR013087 -
Seca3g09659 392 SMART c2h2final6 38 61 IPR013087 -
Seca3g09659 392 SMART c2h2final6 254 275 IPR013087 -
Seca3g09659 392 SMART c2h2final6 194 218 IPR013087 -
Seca3g09659 392 SMART c2h2final6 125 149 IPR013087 -
Seca3g09659 392 SMART c2h2final6 82 104 IPR013087 -
Seca3g09659 392 SMART c2h2final6 284 309 IPR013087 -
Seca3g09659 392 Pfam Zinc finger, C2H2 type 194 218 IPR013087 -
Seca3g09659 392 Pfam Zinc finger, C2H2 type 83 104 IPR013087 -
Seca3g09659 392 SUPERFAMILY beta-beta-alpha zinc fingers 36 104 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09659 Seca-Chr3 238613933 238616837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09659 125 344 C2H2 Transcription Factor Family AT1G72050 51.471 1.60e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g09659 zf-C2H2 0.0019 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09659 K09191 - gmx:100801812 536.569