Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09645 ATGCCGAGCTTCAATTCTGAGTTGCCCATTTCCAGTACATGCTATACAGGGGGGAGCACAGTTGATTCTTTTCACGTATCTGACTTTGGAGCATTTGATCAATCATATCGCATAGAGGATGCTGTTGACCTTAGTGGAAACTCTGTTTTTAACTCACTAAAAGTAAGTGGCCAAACAATTTCTCCGGGTCTTGTTCAGATTAATACTCTTCATAAGTTGCCAACTTCACTTGATAAAAGCCTGTTGACGAACCAAACAGAGCCACATAGGTTGCAATTACAAGAGGTTCAATCATCAAATCCTGGCACAATATTAGGTGGTGATACTGAACACCAAGAAGAATCTGCCATGGCTGATGCCAGTCCTAGGACTGATATTTCTACAGATGTTGACACTGATGACAAGAACCAGCGGTTTGATAGAACTCAATCCCTTGCTGCTGTGGGCTCTGACTCCAGTGACAGATCAAAGGATAAATCAGATCAGAAGAATCTCCGCAGGCTTGCTCAAAATCGCGAAGCAGCAAGAAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGATTGAAGCTGACCCAGCTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAATCTTCATATCAAGCTCTGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGCAATTTGATGCTGAATATGCAAGGTGGCTGGAGGAGCAGAATCGACAAATTAATGAGCTTAGAGCAGCTGTAAATTCTCATGCAAGTGATACTGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGAGATTTTTAAGCTGAAAGGTGTTGCTGCTAAAGCTGATGTTTTCCATTTGTTGTCTGGGATGTGGAAAACACCTGCTGAGAGGTGTTTTTTGTGGCTTGGTGGTTTTCGGTCATCTGAACTCCTCAAGCTCCTGGCAAATCAATTGGAACCTCTTACAGAGCAGCAGCTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTGCAGAGACATTGTCCACTGCAACACCCAACTCATCTGGTTCCTCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGACAGGCTGATAATCTACGCCAGCAGACTCTACAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGTGCACTCCTTGCTATACATGACTATTTTTCGCGACTGCGTGCTCTCAGTTCGCTCTGGCTGGCCCGCCCAAGAGATTGA 1347 0.4514 MPSFNSELPISSTCYTGGSTVDSFHVSDFGAFDQSYRIEDAVDLSGNSVFNSLKVSGQTISPGLVQINTLHKLPTSLDKSLLTNQTEPHRLQLQEVQSSNPGTILGGDTEHQEESAMADASPRTDISTDVDTDDKNQRFDRTQSLAAVGSDSSDRSKDKSDQKNLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDEIFKLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTATPNSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09645 448 MobiDBLite consensus disorder prediction 126 140 - -
Seca3g09645 448 Gene3D - 162 214 - -
Seca3g09645 448 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 205 IPR004827 GO:0003700|GO:0006355
Seca3g09645 448 CDD bZIP_HBP1b-like 163 215 - -
Seca3g09645 448 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700|GO:0006355
Seca3g09645 448 Coils Coil 182 209 - -
Seca3g09645 448 SUPERFAMILY Leucine zipper domain 163 206 IPR046347 GO:0003700|GO:0006355
Seca3g09645 448 MobiDBLite consensus disorder prediction 89 166 - -
Seca3g09645 448 Pfam Seed dormancy control 245 320 IPR025422 GO:0006351|GO:0043565
Seca3g09645 448 Coils Coil 239 259 - -
Seca3g09645 448 ProSiteProfiles DOG1 domain profile. 228 445 IPR025422 GO:0006351|GO:0043565
Seca3g09645 448 SMART brlzneu 159 222 IPR004827 GO:0003700|GO:0006355
Seca3g09645 448 MobiDBLite consensus disorder prediction 152 166 - -
Seca3g09645 448 FunFam BZIP family transcription factor 162 211 - -
Seca3g09645 448 PANTHER TRANSCRIPTION FACTOR TGA9 108 447 - -
Seca3g09645 448 MobiDBLite consensus disorder prediction 89 106 - -
Seca3g09645 448 Pfam bZIP transcription factor 162 203 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09645 Seca-Chr3 238383368 238392115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09645 117 448 bZIP Transcription Factor Family AT3G12250 80.723 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g09645 DOG1 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09645 K14431 - gmx:100101881 758.059