Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09643 ATGGCTTCTTCAGTTGGAGGCAACGGGAACTCGGGTGTCGAGTGGTACGTGCGTCCTCCGAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATTCCAGCTGGTAGAATCAAGATGGAGCTCTTCGCTGATATTACTCCCAAAACCGCTGAGAATTTCAGGCAGTTCTGCACAGGGGAGTACAGGTATGAAACAATCTTTCACAGTCTGGCCAACAATCTTTTATGGAAAGCAGGACTTCCTGTTGGTTACAAGGGTTGTCAATTTCACAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTCAAGGGTGATGGTAGTGGATGTGTTTCCATCTATGGACACAAGTTTGATGATGAGAATTTTATTGCGAAACACACTGGGCCTGGTCTTCTATCAATGGCGAATAGCGGGGTAAATACCAATGGTTGTCAGTTCTTTATAACTTGTGCAAAATGCGATTGGCTTGACAACAAGCATGTCGTTTTTGGGAGAGTGCTTGGAGATGGTCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCAACTGGACCCAACAACCGGCCAAAATTAGCTTGCGTCATCGCTGAATGCGGTGAAATGTGA 621 0.4525 MASSVGGNGNSGVEWYVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADITPKTAENFRQFCTGEYRYETIFHSLANNLLWKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGVNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09643 206 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 88 105 IPR020892 GO:0003755|GO:0006457
Seca3g09643 206 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 27 206 - -
Seca3g09643 206 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 204 IPR002130 GO:0000413|GO:0003755
Seca3g09643 206 CDD cyclophilin_ABH_like 25 204 - -
Seca3g09643 206 FunFam Peptidyl-prolyl cis-trans isomerase 14 206 - -
Seca3g09643 206 PIRSF Peptidylpro_ismrse 14 206 IPR024936 GO:0003755
Seca3g09643 206 Gene3D - 15 206 IPR029000 -
Seca3g09643 206 SUPERFAMILY Cyclophilin-like 16 206 IPR029000 -
Seca3g09643 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Seca3g09643 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 93 105 IPR002130 GO:0000413|GO:0003755
Seca3g09643 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 60 IPR002130 GO:0000413|GO:0003755
Seca3g09643 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 151 163 IPR002130 GO:0000413|GO:0003755
Seca3g09643 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 164 179 IPR002130 GO:0000413|GO:0003755
Seca3g09643 206 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 28 205 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09643 Seca-Chr3 238362425 238371711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09643 21 204 U-box Gene Family AT5G67530 38.172 3.79e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09643 K09567 - zju:107428673 375.941