Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09642 ATGGCGGTTGAATTAGTAGGCAGTGCTCTTGTTTCTGCTTTCCTTCAGGTGACATTTGACAGGTTGGCTTCTGCGGAAATTTTGGACTACTTTCAAGGAAGAAAGCTCAATGAGAAGCTGCTTAACAAGTTGAAGATCATGTTGGGGTCCATCAATGTTGTGGTTGATGATGCAGAACGAAAGCAGATCAGAAATCAAGATGTGAAAGCATGGCTTGATGCTGAGGATCTCTTGGATGAAATAGACACTCAAATCTCCAAATGCAAGCTGGAAGCTGAATCTCAGTCCATTACTAGCAAGGTAAGGAATTTCTTTAGTGCTGCTGTCAGTTCATTTGACAAGGGAATTGAATCAAGGATGCAAGAAGTCCTCAACAACCTAGAATATCTTGCAAGCAAAAAGGATATACTAGGTTTGAAAGAGGCTAGTACTTTTGGTGTTGGATTAGGTAGTCAAATGTCACAAAAATTGGCATCAACATCCCTGCTGGGTGAAACTGTTATCTATGGTAGAGATGTTGACAAAGAAAGAGTCTTTAATTGGCTGATGTCTAACAATGAGAATGACAAATATCAACTGACAATTATTTCTATGGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCCCAACATCTATACAATGACCCAAGGATGGAGGGAAATTTTGATATCAAAGCTTGGGTATGTGTTTCACATGAATTTGATGTTTTTAAGATAACAAGAGCAGTTCTTGAGGCAATCACTGGATCAACTGATGATAGTAGAGACCTAAATATGGTTCATGGAAGATTAAAGGAAAAGTTGAATGGAAAGAAATTTTTCCTTGTTCTGGATGATGTTTGGAACAAAAACCATATGCAATGGGAGGCTTTGCAAACTCCTTTTAGTTATGGGGCTCAAGGAAGCAAAATTCTTGTCACTACACGCAGCATGGAAGTTGCTTCAATCATGCGATCTATTAAAATACATCAGCTAAAGCAATTGCAAGGAGATCATTGTTAG 1005 0.392 MAVELVGSALVSAFLQVTFDRLASAEILDYFQGRKLNEKLLNKLKIMLGSINVVVDDAERKQIRNQDVKAWLDAEDLLDEIDTQISKCKLEAESQSITSKVRNFFSAAVSSFDKGIESRMQEVLNNLEYLASKKDILGLKEASTFGVGLGSQMSQKLASTSLLGETVIYGRDVDKERVFNWLMSNNENDKYQLTIISMVGMGGMGKTTLAQHLYNDPRMEGNFDIKAWVCVSHEFDVFKITRAVLEAITGSTDDSRDLNMVHGRLKEKLNGKKFFLVLDDVWNKNHMQWEALQTPFSYGAQGSKILVTTRSMEVASIMRSIKIHQLKQLQGDHC. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09642 334 Pfam NB-ARC domain 174 334 IPR002182 GO:0043531
Seca3g09642 334 FunFam Probable disease resistance protein At1g61300 151 322 - -
Seca3g09642 334 Gene3D - 27 122 - -
Seca3g09642 334 Pfam Rx N-terminal domain 10 95 IPR041118 -
Seca3g09642 334 Gene3D - 151 323 IPR027417 -
Seca3g09642 334 PRINTS Disease resistance protein signature 195 210 - -
Seca3g09642 334 PRINTS Disease resistance protein signature 268 282 - -
Seca3g09642 334 PANTHER DISEASE RESISTANCE PROTEIN RP 48 334 IPR044974 GO:0006952
Seca3g09642 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09642 Seca-Chr3 238353272 238354276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09642 168 331 WRKY Transcription Factor Family AT5G45050 24.852 1.13e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09642 - - lja:Lj0g3v0227319.1 452.595