Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09635 ATGAGTCCTCCTGCTGCACCTAACATGGAAGAAGCCAAGCCTTCGGTTGCCTCGGTCGATAATGGCGACCAAGTCGAGTCTCGGTTCGCCCAGTTTTGCCAGAATGGGCTAGCATTGGATGAAAAAAGCTGTAAAGAAGCAACGAATCTCTTTGGAGAGACCAAACATCTTCTACAGACAAATGTTTCATCAATGGGGAATGGAACGTCTGAAGAAGCCGAGCGGTACTGGTTTGCTTTTATTATATACTCTGTCAAGAGATTGACTCAGAGAAATGAGGAGAGTGGGACAGAAGAAACTGAGAACACCGGGCTTACCTTGTGTTGTATATTGAGAGCAGCTAAGCTGAACATTGGAGATTTTTTTAAAGAACTTCCTCAGTATGTTGTTAAGGCTGGTCCACTTATAAGTAATCTATATGGCGCAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCAAACGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTCGTGTCAACTGATGCAAATGTTGAAAAGAACTCATCTGTTACTGTTCATGCATCCCAATACCATCGCTTTGGATGGCTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGATTTGGTGACTTGCACCAACGGTTTAATTTCAATTTTGGCCATCTTAGTTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATTCTCGACTCTTCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATTTAATAGCAGATATATTGAAGAAGAAGCCCTGTTTGGCGTCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATGGTTTGACCTATTTTAAAGATCTAATGGAGGAATCAGCTCTGCTATCTAGTTTAAATATCTTAGAAAAAGATTATGATTACATGATTCGCAACAAGGGTGAACTGGATGAGAGGTTATTCATTAATGAAAATGACAGCCTGCTAGCTTCAGGAAGCTTGTCTGGCGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCCCACCGCTCTCCTGCATCCCATGCCAATGGCATTCCAGGTAGTGTGAATTCAAAGATGGCAGCTACCCCTGTGAGCACAGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTCCATCAAGGCCCTCGCAAGAGCTAGAGCGATTCTTGACATCATGTGACAAGGATGTAACAAGTGATGTTGTTCACAGAGCGCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGGGAACGATGTGTAACTGGAAACCTGCAAAGCGCAAGTCTCATGGACAATATATGGGCGGAACAGCGAAGATTAGAAGCACTAAAGTTATACTATAGGGTATTGGAAGCAATGTGCAGAGCAGAGGCTCAGATACTTCATGCAACTAATTTAACCTCGCTACTAACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTTCTTGAAAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACACGAAGAGTCCCTCCCAAGAGAGTTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTGGCAGTTGCTAGACCTGCTCTTTCTGCGGAAATCAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGGCTACCTCCTGTGCCACCACTGCCTAAGCTTGAGACTTCACCAACTCAGAATGGGGATACCAGATCACCAAAGCGACTCTGTACAGAATATCGAAATGTGTTAGTGGAACGAAATTCTTTTACTTCACCAGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAGCTACCACCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCTGTCAGAATCAGTGGCATGGTTGAAAGGCTACAATTATCCCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTATATCAATGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTCTATGGTGTTGCAAAGATTTCTCAAATGAACCTAACTTTTAGGGAGATCATATACAACTATAGAAAACAACCACAATGCAAACCGCAAGTTTTTCGTAGTGTCTTTGTTGATTGGTCATTGGCACGCCGTAATGGGGCATGTAAACAGAGAACAGGACAGGAGCATGTTGACATCATTACATTTTACAATGAGATATTCATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGGCCCTGGTGGAGCAACTATGAAAAGCGACCAAATACCTGCAGTTAATAATAAGAATGATGGCCATTTAGTTCAGTGTCCTGGGTCTCCTAAAATATCACCTTTCCCAAACCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCCACACACAATGTATATGTCTCTCCATTACGATCGTCTAAGGTACTAATATATTTGCTTGGCTTTCTTCTTTAG 2850 0.4232 MSPPAAPNMEEAKPSVASVDNGDQVESRFAQFCQNGLALDEKSCKEATNLFGETKHLLQTNVSSMGNGTSEEAERYWFAFIIYSVKRLTQRNEESGTEETENTGLTLCCILRAAKLNIGDFFKELPQYVVKAGPLISNLYGADWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVSTDANVEKNSSVTVHASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILVIHVPARFRNFNILDSSRFVKKSSKGVDLLASLCNIYNTSEDELRKTMEKANNLIADILKKKPCLASECETENLENFDRDGLTYFKDLMEESALLSSLNILEKDYDYMIRNKGELDERLFINENDSLLASGSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSVNSKMAATPVSTAMTTAKWLRTVISPLPSRPSQELERFLTSCDKDVTSDVVHRAQIILQAIFPSSPLGERCVTGNLQSASLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPPLPKLETSPTQNGDTRSPKRLCTEYRNVLVERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILYQWTSLFFNRHIDQIILCCFYGVAKISQMNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLARRNGACKQRTGQEHVDIITFYNEIFIPSVKPLLVELGPGGATMKSDQIPAVNNKNDGHLVQCPGSPKISPFPNLPDMSPKKVSATHNVYVSPLRSSKVLIYLLGFLL. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09635 949 Gene3D - 704 896 - -
Seca3g09635 949 CDD CYCLIN_AtRBR_like 741 876 - -
Seca3g09635 949 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g09635 949 Coils Coil 268 292 - -
Seca3g09635 949 SMART DUF3452_2 88 234 IPR024599 -
Seca3g09635 949 FunFam Retinoblastoma-related protein 1 691 908 - -
Seca3g09635 949 MobiDBLite consensus disorder prediction 388 411 - -
Seca3g09635 949 SUPERFAMILY Cyclin-like 424 619 IPR036915 -
Seca3g09635 949 Pfam Retinoblastoma-associated protein B domain 741 872 IPR002719 GO:0005634|GO:0051726
Seca3g09635 949 Pfam Retinoblastoma-associated protein A domain 416 617 IPR002720 GO:0005634|GO:0051726
Seca3g09635 949 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 939 IPR028309 GO:0006357|GO:0051726
Seca3g09635 949 Gene3D - 419 607 - -
Seca3g09635 949 SMART RB_A_2 416 617 IPR002720 GO:0005634|GO:0051726
Seca3g09635 949 FunFam Retinoblastoma-related protein 1 419 607 - -
Seca3g09635 949 Gene3D - 195 353 - -
Seca3g09635 949 SUPERFAMILY Cyclin-like 739 914 IPR036915 -
Seca3g09635 949 FunFam Retinoblastoma-related protein 1 195 353 - -
Seca3g09635 949 Pfam Domain of unknown function (DUF3452) 99 234 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09635 Seca-Chr3 238227143 238235725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09635 9 940 Core Cell Cycle Gene Families AT3G12280 70.588 0.0 1334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Seca3g09635 RB_A 1e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09635 K04681 - gmx:100779266 1614.74