Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09616 ATGGCATCCTCAAATTCACCATGTGCAGCATGCAAATTTCTACGCCGAAAATGCCAACCAGAATGTGCATTTGCACCATACTTCCCACCTGATCAGCCTCAAAAATTTGCAAACGTTCATAGGATCTTTGGGGCAAGCAATGTGACAAAGCTTCTCAATGACTTGCACCCTCACCAACGTGAAGATGCAGTGAATTCCCTTGCTTATGAAGCTGAGATGAGGCTCCGTGATCCTGTCTATGGCTGTGTAGGAGTCATCTCTCTCCTTCAACATCAACTCCGCCAACTCCAAATGAGTCTTTATTGTGCTAAATCCGAACTCTCTAGGTACCAAAACTTGAACATCACCACCAGCCACAATCTCATGCCTGGTGGTGACTCTGCAGTCACGACCGCTAATTACTACCACTCACAGAATATGAGTGGTGGTAACGGTCGTGACAACAACAACTTTCATCACCACCATCACCATCACCAATTCTTTCCAATGGATCAGTACCAGCAACAACAGCAACAGCAACAACAACAGAAGCAAAATATGGTTAGAAATTTTGATGGAGGGAACAACTATGATGCAAGTCTTTTGGCCATGAACATATCTGCTAGCTTAGGACAACTCAATCAGCTTCAACAGCATAGTGCTGCAAGCGGTGGTGATGACCGCCGCACCATCAACCGTTCCTAG 684 0.4561 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMSLYCAKSELSRYQNLNITTSHNLMPGGDSAVTTANYYHSQNMSGGNGRDNNNFHHHHHHHQFFPMDQYQQQQQQQQQQKQNMVRNFDGGNNYDASLLAMNISASLGQLNQLQQHSAASGGDDRRTINRS. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09616 227 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca3g09616 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 174 - -
Seca3g09616 227 Coils Coil 163 183 - -
Seca3g09616 227 MobiDBLite consensus disorder prediction 162 186 - -
Seca3g09616 227 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09616 Seca-Chr3 238001238 238003166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09616 2 227 AS2 family AT1G65620 58.333 2.26e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g09616 LOB 5e-42 No_clan