Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09606 ATGGTCACTGCAAAATTCATTGAGAACTCTAAACCATACTTTGCCATGATATGTTTACAGTTTGGGTATGCTGGCATGAATATTATCACTAAGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTCTATCGCCACGCCTTTGCAACTGCTGTTATCGCTCCATTTGCTTTTATTTTTGAAAGGAAAGGTCAACCAAAGATAACATTCCCAATTTTCGTGCAAATTTTTGTCCTAGCTCTTCTCGGGCCAGTGATTGATCAAAATTTCTACTATGCTGGGTTGAAGCTCACATCCCCAACCTTCTCATGTGCAATGAGTAACATGCTTCCAGCCATGACTTTTGTCATGGCAATTTTATGCCGGATGGAGAAGATTAACATAAAGAAAGTGAGGTGCCAAGCAAAGATAGTGGGAACATTAGTGACAGTAGCTGGGGCAATGCTGATGACTTTATACAAAGGCCCTATTGTGGAGATGATATGGGCCAAACATCCTCACAATAAAACCCATGCACCAAGCTCCACTGGATCCTCTGACAAAGATTGGTTCTTAGGCTGCATCTTCCTTATCATTGCCACCCTTGCCTGGGCTTCCCTCTTTGTTTTGCAAGCCAAAGCTATAGAGACGTACAAGAATCATCAGCTAAGCCTCACTTCACTTGTCTGCTTTATTGGCACTCTTCAAGCTGTTGCTGTTACTTTTGTTGTGGAGCACAATCCTTCTGTTTGGAGAATTGGTTGGGATATGAATTTACTTGCTGCTGCCTATGCAGGTATTGTGACCTCAAGCATATCATACTATGTACAAGGGCTGGTGATTAAGAAGAAAGGACCTGTCTTTGCAACTGCCTTTAGTCCTCTAATGATGATCATTGTTGCCATCATGGGCTCCTTTATCCTTGCAGAACAGATTTATCTTGGAGGTGTGATTGGTGCCATCTTGATAGTTATAGGCCTATACTCTGTTCTGTGGGGAAAGCAAAAAGAACGAATAGAGACTAAAGTAGCAGATGACATTCCCTTGCCTGTGAAAGGTGCTCAAATGGGAGGAAGTTCAGGGTCAGTGATTGATGACACAGATCATTTCTCTCAAGTAAAATCTGGTCAGAAAGGGGAAGACAATAACAAGCTCTCTTCAGTTGTAATAAGCATGCCTATTAGAGAGCCAACAAAAGTTAACCAAGAAGCAGAGGCTTAA 1206 0.4237 MVTAKFIENSKPYFAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATAVIAPFAFIFERKGQPKITFPIFVQIFVLALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAILCRMEKINIKKVRCQAKIVGTLVTVAGAMLMTLYKGPIVEMIWAKHPHNKTHAPSSTGSSDKDWFLGCIFLIIATLAWASLFVLQAKAIETYKNHQLSLTSLVCFIGTLQAVAVTFVVEHNPSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILAEQIYLGGVIGAILIVIGLYSVLWGKQKERIETKVADDIPLPVKGAQMGGSSGSVIDDTDHFSQVKSGQKGEDNNKLSSVVISMPIREPTKVNQEAEA. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09606 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 156 - -
Seca3g09606 401 PANTHER WAT1-RELATED PROTEIN 12 336 IPR030184 GO:0016020|GO:0022857
Seca3g09606 401 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020
Seca3g09606 401 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020
Seca3g09606 401 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09606 Seca-Chr3 237488364 237491155 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09606 6 391 Nodulin-like Gene Family AT5G07050 68.408 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09606 - - gmx:100804390 681.019