Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09595 ATGGAGATGGAGGGAACACAACTCAGTGTGAGATTAATAACCTTTTCTTTCTTGCTATTGTTGAGCTTCAACTCACTTGTTACAAAGGCACAATCACCCAACTACTTGGGAGATGACTGTCGTAGCACCATCCCAAAAGCTCTCACCTTTGCCTACAAAACCAATCTTAACAGCACCTTCTCATGGCTAAGCACTAATGCAGCCACAAGCAAAGGTTATAACCACACCACCATAGGCAACAAAACCTCAGGTGATGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTAGTTGGATACTTCTGTCAATTCTGTGTCTCTACTGCCACCAGAGATGTTCTTCAGCGCTGCCCCAACAGAGTCTCTGCTGTTGTATATTATGATTTCTGCATTCTCAGGTTCTCAAATGAGAACTTCTTTGGGAATGTTACAATAGACCCTTCATGGCATGATCTTGGAACAAAAAACATCTCTAGTGTAGCAGAGATTCAGAAAGGTGAGGACTTTATGAGAAGTTTGATCAGAAAAGCAACCGTAGAGACCAAACAGTTGTTCTTTGTGGGTGGTTTCAATTTGAGTTCTACTGAGAGGAGGTATGGCATGGTGCAATGCAGCAGAGATCTTACAGATGAGGGGTGTAGACAGTGTTTAGAGGTCATGTTAGCAAAAGTTCCCAAATGTTGTGCACAAAAGAAAGGATGGGTGGTTGGGTCTGCAAGTTGTCTCTTGAAGTATGATGATTACATGTTCTATCTTTTTCACAACCAAGCATCTTCAGCTCCTCTGCCTGATCAGCAAACAGGTAAACAAAGGGGTAATGCTAGTAAGTCAAGAAAGTTGATCATTGGCTTGTGTGTCCTGGGGTCAGCAGCTCTACTATGTTTCAGTGTCTACTGCTTCTGGTGCAGGAACAGAGTTAGAAAAGGTAATTTGTTTCCTAGAATATTTCACATACTCAAATATGGTTATTCAGATAAAGAGGAAACACTGAATGCAGACTTGCCTACAATCCCATTAATCACAATTCTACAGAGTACTGATAACTTTTCAGTAGCATCTAAATTAGGAGAAGGTGGATTTGGACCCGTTTACAAGGGAACTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCAAAAGCCTCTGGTCAAGGGTCAGAGGAGTTCAAGAATGAAGTAATGCTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAATGAAAAGCTACTTGTGTATGAGTATTTGTCAAATTCAAGTCTCGACTTTCACCTCTTTGATGATGAAAAAAGAAAGCAACTGAACTGGAAACTACGATTAAGCATTATCAATGGAATATCAAGAGGTATTTTGTACCTTCATGAGGACTCTCGACTCAGAATAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAATAGGCCAAAACCAAGCAAATACCAAACGAGTAATGGGTACCTACGGGTACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTAGTGGGAAAAAGAATAGTGGATTCTATCTGTCAAAACATGGTCAAAGTCTTCTTTTATATACATGGAAAAAATGGTGTGAAGGAAAATGTTTGGAACTAATGGATTCATTATTGGAAACATCCTGCATAGCAAGTGAAGTTGTGAAGTGCATACACATTGGATTATTGTGTGTTCAAGAAGATGCAGCAAATAGGCCAACCATGTCGAGTGTTGTTGTAATGTTGGCGAGTGACACAATGGCCCTTCCAAAACCCAAAACCCCAGCATTTTCGGTTGGAAGAATGATAGAGGAAGCATCTACTTCACAGAGTTCCAAGAATCTTTCTATCAATGAAGTAACAATCTCTAACATTTTACCAAGGTAA 2001 0.3998 MEMEGTQLSVRLITFSFLLLLSFNSLVTKAQSPNYLGDDCRSTIPKALTFAYKTNLNSTFSWLSTNAATSKGYNHTTIGNKTSGDAVYGLYDCRGDVVGYFCQFCVSTATRDVLQRCPNRVSAVVYYDFCILRFSNENFFGNVTIDPSWHDLGTKNISSVAEIQKGEDFMRSLIRKATVETKQLFFVGGFNLSSTERRYGMVQCSRDLTDEGCRQCLEVMLAKVPKCCAQKKGWVVGSASCLLKYDDYMFYLFHNQASSAPLPDQQTGKQRGNASKSRKLIIGLCVLGSAALLCFSVYCFWCRNRVRKGNLFPRIFHILKYGYSDKEETLNADLPTIPLITILQSTDNFSVASKLGEGGFGPVYKGTLPDGRQIAVKRLSKASGQGSEEFKNEVMLIAKLQHRNLVRLLACCLEENEKLLVYEYLSNSSLDFHLFDDEKRKQLNWKLRLSIINGISRGILYLHEDSRLRIIHRDLKASNVLLDHEMNPKISDFGLARAFEIGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIISGKKNSGFYLSKHGQSLLLYTWKKWCEGKCLELMDSLLETSCIASEVVKCIHIGLLCVQEDAANRPTMSSVVVMLASDTMALPKPKTPAFSVGRMIEEASTSQSSKNLSINEVTISNILPR. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09595 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Seca3g09595 666 FunFam Cysteine-rich receptor-like protein kinase 10 148 250 - -
Seca3g09595 666 FunFam Liguleless narrow1 425 628 - -
Seca3g09595 666 CDD STKc_IRAK 355 620 - -
Seca3g09595 666 Pfam Protein tyrosine and serine/threonine kinase 351 619 IPR001245 GO:0004672|GO:0006468
Seca3g09595 666 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Seca3g09595 666 Pfam Domain of unknown function (DUF3403) 622 666 IPR021820 GO:0004674
Seca3g09595 666 Gene3D Transferase(Phosphotransferase) domain 1 425 629 - -
Seca3g09595 666 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09595 666 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 317 424 - -
Seca3g09595 666 SUPERFAMILY Protein kinase-like (PK-like) 336 643 IPR011009 -
Seca3g09595 666 Gene3D - 40 139 IPR038408 -
Seca3g09595 666 Gene3D - 150 250 IPR038408 -
Seca3g09595 666 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Seca3g09595 666 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Seca3g09595 666 Pfam Salt stress response/antifungal 168 248 IPR002902 -
Seca3g09595 666 Pfam Salt stress response/antifungal 50 136 IPR002902 -
Seca3g09595 666 SMART serkin_6 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09595 666 FunFam Cysteine-rich receptor-like protein kinase 28 36 138 - -
Seca3g09595 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09595 Seca-Chr3 237332988 237340007 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09595 14 666 Receptor kinase-like Gene Family AT4G05200 41.124 2.20e-172 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g09595 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09595 - - gmx:100795922 1022.31