Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09592 ATGAAAATGAAAATGTTACTCCCTACCATAACCTCTATGAGGTTTCTTACTTTCATTCTCCTCTTCCTCATTACCCCAACAATTGCACAATCCCCAATCTACATGTACAATTCTTGCCAGAACACAACAGGAAAATCTCTCCCAACTTCCTACCAAACCAACGTTAACAACCTCCTCTCTTGGATAGCCTCAGATTCATCCAAAGGCAACGAATATAACCACATCACCATAGGGAACAACAATGGTCATGATGATGTTGTTTATGGGAGCTATGATTGCAGGGGAGACATCACAGGGTATTTTTGTCAATTCTGTCTCAACACTGCTGCCAGAGAAATTGTTCAACGTTGTCCTAACAGTGTCTCAGCTGTTATATGGTATGATATATGTATCATTCGTTACTCCAATCAGAGTTTCTTAGGAAAACTTTCTTTAACCCCATCATGGAATGTTACTGGATCTAAAAGTATAAAGGACTCAACAGAGGTTGGGAAAGCAGAGTCTAATATGGAGAGTTTGATAAGAAAAGCAACTATAGAGGCCAACCAGTCTTGGGCAATGGGTGAGTTTAATTGGAGTGACAATGAGAAAAGGTACGGTTGGGTTCAGTGTGCTAAAGACCTTAGTAATGATGGGTGTAGATTGTGTTTGGAGGCTATGTTGGACATTGTTCCCAAATGTTGTGGGACAAAAGTGGGATGGGCGGTTGTGGCTCCAAGTTGTGGGATGAAGTTTGATGATTATTTGTTCTATCAGTTTAACAATCAAACTGAATCTTCTTCTCCTATGCCCAATCCAGCCAAGCAGGAAGGTGCAAGTAATACCAAAACCTTGATCATCACCTTAGTAAGTGTGTTGGTGGGAGTAGCTTTACTAAGTTATTGTATCTACTTCTCCTGCAGAAGGAATGGGTTATGTAAAGATGGATTGCTGTTGAAGACCATTCCTATAACGTTTCATGATCATGTTCAAAGAGAGGATTCATTGAAACCAGACCTTCCTATAATTCCTTTTACTGTAATTCAACAGAGCACAAATTTCTTTTCAGAGACATCTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGTACTTTACCAGATGGGACAGAAATTGCTGTCAAAAGGCTTGCAGAAACGTCAATTCAAGGTTTAGAGGAGTTCAAGAATGAAGTAATCTTCATAGCTAAATTGCAACACAGAAACCTTGTGAAACTCTTGGGTTGCTGCATTGAGGAAAATGAAAAGATACTGATATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAATGAGGAAAAGCAAAAGCAACTAGATTGGAAATTACGACTAAGCATTATCAATGGAATTGCAAGAGGACTGTTATACCTTCATGAGGATTCTAGACTTAGAGTAATCCATAGAGATATGAAAGCCAGCAATGTTCTTCTTGACCATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAGAGGTCAAAATCTGACAAAAACAAAAAGAGTAATTGGCACCTACGGATACATGGCTCCAGAATATGCTATGGCAGGGTTATTTTCAGTGAAATCTGATGTTTTTAGCTTTGGAGTTCTTATATTAGAAATCATTTACGGCAAAAGGAATGGTGAATTCTTTCTTTCAGAACATGGGCAAAGTCTTCTATTATATGAAGATGCAGCAGATCGACCAACCATGTCAACTGTTGTTCTCATGCTAGGGAGTGACACAATGGCCCTTCCCAAACCCAAGCAACCAGCATTTTCAGTTTACTCCATGGATGGAACACAGCTCAATATGAGATCAATAACCTTTGCTTTCCTGCTATTGCTGAGATTCAACCCATTCATTACAAAGGCACAATCACCCAACTACATGGGAGATGACTGTCATAACACCATCCAAAAAGCTCCAAGCAGTGCATACAAAACCAATCTTAACAAAATCCTCTCATGGCTATCCACTAATGCAGCCACAAGCAAAGGCTATAACCACACCACCATAGGCAACAAAACCTCAGGTGATGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTACTGCTACCAGAGAAGTCCTTCAACGCTGCCCCAATAGAGTCTCTGTTATCATATGGTATGATTTCTGCGTTCTCAGATACTCAAATGAGAATTTCTTTGGGAAAGTTTCAACAGACCCTTCATGGAATATTGTTGGAACTAAAAACATCTCTAGTAGAATAGAGATACAGAAAGGTGAGGATTTTATGAGAAGTATGATCACAAAAGTAACTAATGAGACCAAACAGTTATTCTATATGGATGGGTTCAATTTGAGTTCTACTGAGAGAAGATATGGCCTGGCACAATGCACCAGAGATCTTACAAATGAGGAGTGTAGAAAGTGTTTAGAGGCCATGTTAGCACAAGTTCCCAAATGTTGTGAACAAAAGATAGGGTGGCTGGCAGGGTCTGCAAGTTGTCTCATCAAGTATGATGATTACATGTTCTATCTTTCTCACAATCAATCATCTTCAGCTCCTCTGCCTGATCAGCAAACAGGTCACAAATCATTTACTTCTTGTTCTCCCAAACAAGGGAGTAATACTAGTAAGTCAAGAAACTTGATCATTGTCTTGAGTGTTCTGGGGTCAGCAACTCTACTATGTTTCAGTGTCTACTGCTTCTGGTGCAGGAATAGATTTAAATATAATCTCAACAAACTTCTCTTTGTAGATTCACTGGCACCTGATACCATTCCTCTATCTTCATATGAGGAAACACTGAATGCAGACCTGCCTACAATCCCATTAATTACAATTCTACAGAGTACTGGTAACTTTTCAGGCACATCTAAATTAGGGGCAGGTGGATTTGGCCCCGTTTATAAGGGAATTCTACCAGATGGAAGACAAGTTGCAGTGAAAAGGCTCTCAAAAGCTTCTGGTCAAGGGTCAGAGGAGTTCAAGAATGAAGTAATGTTTATAGCCAAATTGCAACACCGCAACCTTGTTAGACTTTTGGCATGTTGCTTGGAAGAAAATGAAAAGCTACTTGTGTATGAGTACCTGTCCAATTCAAGTCTAGACTTTCACCTGTTTGATGATGATAAAAGAAAGCAACTGGACTGGAAACTGAGATTAAGCATTATTAATGGAATAGCAAGAGGTATTTTGTACCTTCATGAGGACTCTCGACTCAAAATAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTCAAACAGGACAAAACCAGGCAAACACAAACCGAGTAATGGGAACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTAGTGGGAAAAAGAATAGTGGATTCTATCTGTCAGAACATGGTCAAAGTTTTCTTTTATATACATGGAAAAAATGGTGTGAAGGAAAATGTTTGGAACTAATTGATTCAGTACTGGAAACATCCTACATAGCCAGTGAAGTTGTGAAGTGCATACACATTGGATTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCAAGTGTTGTTGTAATGTTGGCTAGTGACACAATGGCCCTTCCAAAACCCAAAGCCCCAGCATTTTCTGTTGGAAGAATGATCACAGAGGATGCATCTACTTCAAAAAGTTCTAAGAATCTTTCTATCAATGAAGTAACAATCTCTAACATTTTACCAAGGTAA 3831 0.3905 MKMKMLLPTITSMRFLTFILLFLITPTIAQSPIYMYNSCQNTTGKSLPTSYQTNVNNLLSWIASDSSKGNEYNHITIGNNNGHDDVVYGSYDCRGDITGYFCQFCLNTAAREIVQRCPNSVSAVIWYDICIIRYSNQSFLGKLSLTPSWNVTGSKSIKDSTEVGKAESNMESLIRKATIEANQSWAMGEFNWSDNEKRYGWVQCAKDLSNDGCRLCLEAMLDIVPKCCGTKVGWAVVAPSCGMKFDDYLFYQFNNQTESSSPMPNPAKQEGASNTKTLIITLVSVLVGVALLSYCIYFSCRRNGLCKDGLLLKTIPITFHDHVQREDSLKPDLPIIPFTVIQQSTNFFSETSKLGEGGFGPVYKGTLPDGTEIAVKRLAETSIQGLEEFKNEVIFIAKLQHRNLVKLLGCCIEENEKILIYEYMPNSSLDFHLFNEEKQKQLDWKLRLSIINGIARGLLYLHEDSRLRVIHRDMKASNVLLDHEMNPKISDFGLARTFERGQNLTKTKRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLILEIIYGKRNGEFFLSEHGQSLLLYEDAADRPTMSTVVLMLGSDTMALPKPKQPAFSVYSMDGTQLNMRSITFAFLLLLRFNPFITKAQSPNYMGDDCHNTIQKAPSSAYKTNLNKILSWLSTNAATSKGYNHTTIGNKTSGDAVYGLYDCRGDVVGYFCQFCVSTATREVLQRCPNRVSVIIWYDFCVLRYSNENFFGKVSTDPSWNIVGTKNISSRIEIQKGEDFMRSMITKVTNETKQLFYMDGFNLSSTERRYGLAQCTRDLTNEECRKCLEAMLAQVPKCCEQKIGWLAGSASCLIKYDDYMFYLSHNQSSSAPLPDQQTGHKSFTSCSPKQGSNTSKSRNLIIVLSVLGSATLLCFSVYCFWCRNRFKYNLNKLLFVDSLAPDTIPLSSYEETLNADLPTIPLITILQSTGNFSGTSKLGAGGFGPVYKGILPDGRQVAVKRLSKASGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEENEKLLVYEYLSNSSLDFHLFDDDKRKQLDWKLRLSIINGIARGILYLHEDSRLKIIHRDLKASNVLLDHEMNPKISDFGLARAFQTGQNQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIISGKKNSGFYLSEHGQSFLLYTWKKWCEGKCLELIDSVLETSYIASEVVKCIHIGLLCVQEDAADRPTMSSVVVMLASDTMALPKPKAPAFSVGRMITEDASTSKSSKNLSINEVTISNILPR. 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09592 1276 Pfam Protein tyrosine and serine/threonine kinase 962 1228 IPR001245 GO:0004672|GO:0006468
Seca3g09592 1276 Pfam Protein tyrosine and serine/threonine kinase 351 547 IPR001245 GO:0004672|GO:0006468
Seca3g09592 1276 SUPERFAMILY Protein kinase-like (PK-like) 945 1255 IPR011009 -
Seca3g09592 1276 FunFam Liguleless narrow1 424 565 - -
Seca3g09592 1276 FunFam Cysteine-rich receptor-like protein kinase 28 35 138 - -
Seca3g09592 1276 Gene3D - 631 736 IPR038408 -
Seca3g09592 1276 Gene3D - 747 847 IPR038408 -
Seca3g09592 1276 Gene3D - 32 139 IPR038408 -
Seca3g09592 1276 Gene3D - 150 250 IPR038408 -
Seca3g09592 1276 FunFam Cysteine-rich receptor-like protein kinase 10 745 847 - -
Seca3g09592 1276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1079 1091 IPR008271 GO:0004672|GO:0006468
Seca3g09592 1276 ProSiteProfiles Gnk2-homologous domain profile. 631 736 IPR002902 -
Seca3g09592 1276 Gene3D Phosphorylase Kinase; domain 1 930 1033 - -
Seca3g09592 1276 Gene3D Phosphorylase Kinase; domain 1 317 423 - -
Seca3g09592 1276 Pfam Salt stress response/antifungal 767 845 IPR002902 -
Seca3g09592 1276 Pfam Salt stress response/antifungal 637 733 IPR002902 -
Seca3g09592 1276 Pfam Salt stress response/antifungal 166 248 IPR002902 -
Seca3g09592 1276 Pfam Salt stress response/antifungal 39 137 IPR002902 -
Seca3g09592 1276 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Seca3g09592 1276 CDD STKc_IRAK 354 548 - -
Seca3g09592 1276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Seca3g09592 1276 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 315 423 - -
Seca3g09592 1276 CDD STKc_IRAK 964 1229 - -
Seca3g09592 1276 SMART serkin_6 348 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09592 1276 SMART serkin_6 958 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09592 1276 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 623 1272 - -
Seca3g09592 1276 Pfam Domain of unknown function (DUF3403) 1231 1276 IPR021820 GO:0004674
Seca3g09592 1276 ProSiteProfiles Protein kinase domain profile. 958 1234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09592 1276 MobiDBLite consensus disorder prediction 857 880 - -
Seca3g09592 1276 FunFam Cysteine-rich receptor-like protein kinase 28 633 735 - -
Seca3g09592 1276 SUPERFAMILY Protein kinase-like (PK-like) 334 603 IPR011009 -
Seca3g09592 1276 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 928 1033 - -
Seca3g09592 1276 ProSiteProfiles Gnk2-homologous domain profile. 742 847 IPR002902 -
Seca3g09592 1276 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09592 1276 Gene3D Transferase(Phosphotransferase) domain 1 424 589 - -
Seca3g09592 1276 Gene3D Transferase(Phosphotransferase) domain 1 1034 1237 - -
Seca3g09592 1276 FunFam Liguleless narrow1 1034 1237 - -
Seca3g09592 1276 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09592 Seca-Chr3 237280680 237298538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09592 19 604 Receptor kinase-like Gene Family AT4G05200 39.408 4.36e-153 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g09592 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09592 - - ahf:112718031 1458.35