Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09584 ATGTCTGAAGAATCACAGAGAGTTGTGGTGATCCACTATGCATCAAAAGACTTTAGTTCAAGTGCCATTAAATGGGCCCTGAATGGCTTTTCACTTGAGCGTGGAGATGAGCTTATACTTCTTGCAATTGTAAATAGTTCAAGTAGGATTCCCTTCATTGCACCTTCCAGATTTCGGGGAATATTTGAGCTTGACCAGAAAATTGTTATGGAAGAGGTTGCAAAGAAGAAGGAAGAGTTCCATAACAATCCAAGCATTAGGAAGATCTCTGAGCAATGTGAAACAGACAAGATTCAGTTCCGGACTGAAGTGCTTCCAGGCAATTTACCAGAGGTTGCTGTAATTGCTGCCATCCGTTTGAAGGCAACATCAGTGATACTTGATAGAGCTATGAAGACATACACCAAGGATTTCATGCAGAGTCTCTCTTGTGCTTTGCTGATAATGAAACGTGATAATTCCATTAAGCACTTGAAAGGGCCAAGGAAAACAAAGCTTTTTGGTAGAAGCAATGGCAATGCAAGTTGTGTAAGATGTTCTAAATCCTCACCACGTATGCAACGCATGGCAAATGCAGTTTTCTGCTTCAATCCCAGCTCTACTCTTACCAAGGCTGTGTGTCCTCGCCTTCATTCTCAAATTAAACAAAGCACTCAAAATAGAGAACTAGACATGGCAAGAGGGTATTGCCTATTACCTATTCCTGATACTCCAAAGACTAATGGTACTGAAATGCATCACATGGAAACAATAGTTGAACATAGCAACAACCATGAAGCATATCAGGTGGTTAAGACTAGTGGTACTGAATTGTATCACATGGAACATAACAACAACCATGAAGCATATCAGATAGATGAACAATTGAAAGATTATGTTTGTTCAGTGTGTGAGAACAGAAGACCAAAATTTGAATTGATGAAAGAGTTCACCTATGCAGAGCTGCATGAAGCCACAAATGGTTTTTCCCCAAAGAACTATTTGTCAGAAGGTGGATTTGGTTCTGTATACAAAGGGATGCTGAAAGGACTCAAGATTGCTGTTAAGCAACATAAGTGTGCAAGCCTCCAAGGAGAGAAGGAGTTCAAGTCTGAAGTTAATGCACTCAGCAAAGCATTACATGAGAATGTGGTCATGCTTATGATTATGAAGCAATGGTAA 1161 0.4005 MSEESQRVVVIHYASKDFSSSAIKWALNGFSLERGDELILLAIVNSSSRIPFIAPSRFRGIFELDQKIVMEEVAKKKEEFHNNPSIRKISEQCETDKIQFRTEVLPGNLPEVAVIAAIRLKATSVILDRAMKTYTKDFMQSLSCALLIMKRDNSIKHLKGPRKTKLFGRSNGNASCVRCSKSSPRMQRMANAVFCFNPSSTLTKAVCPRLHSQIKQSTQNRELDMARGYCLLPIPDTPKTNGTEMHHMETIVEHSNNHEAYQVVKTSGTELYHMEHNNNHEAYQIDEQLKDYVCSVCENRRPKFELMKEFTYAELHEATNGFSPKNYLSEGGFGSVYKGMLKGLKIAVKQHKCASLQGEKEFKSEVNALSKALHENVVMLMIMKQW. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09584 386 ProSiteProfiles Protein kinase domain profile. 322 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09584 386 PANTHER OS01G0253100 PROTEIN 200 381 - -
Seca3g09584 386 Pfam Protein tyrosine and serine/threonine kinase 326 381 IPR001245 GO:0004672|GO:0006468
Seca3g09584 386 Gene3D Phosphorylase Kinase; domain 1 293 384 - -
Seca3g09584 386 FunFam Proline-rich receptor-like protein kinase PERK8 284 383 - -
Seca3g09584 386 SUPERFAMILY Protein kinase-like (PK-like) 305 380 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09584 Seca-Chr3 237151242 237155553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09584 310 381 Trihelix Transcription Factor Family AT4G32710 53.425 4.83e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca3g09584 PK_Tyr_Ser-Thr 2.2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09584 - - gmx:100810950 474.937