Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09582 ATGAGACGGATGAAGAAGGAGATTGAAGTTGAGGTTCTCCCCAATGATCAGAGTGAGTCACAGTTAAATGATGAGGGTTGTGAAGGAAGTGCCTATGGAGTTGTTCTGAAAAAAGGGCCATGGACACCTGCTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCACAAGCACACGGGCCTGTTACGTTGTGGAAAAAGTTGTCGACTGCGGTGGACTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACCACAGAGGAGGAGCGCTTGATTGCTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGGACAGATAATGAGATAAAGAACTATTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGATTGCCACTTTATCCTCCTGAAGTTTGTTTGCAAGCATTACAAGAGAGTCAGCATGGCCAAAACACTTGTGGAATTAATGGTGGCAATAAAGTGCATCCTGATTTCTTGCAGAAAAAGAGTTATGAGATACATGATGCAATATTTGACAGTCTGAAGGATAACCAGGGAAGCTTACCTTATGTGCCTGAGCTTCATGATATTTCTGATTATTGCAATATGCTGAAAGGTCTTGATTCTTCTCAATTTTGTTTTGTGCCATCAACACCATCTAACCATAAACGTCTTCGAGAGTCAACAATGCCATTTCTTGATTCCGGTGGTATGAACAGAAATGGTTTTTATCCATTTGATCATATTCAGGATAATACTTCTGATAAGATTGCACAATCATTTGGAATGCAATCACCCCTTGATCTTGGCCCCTCCTCACACAGCTCAATTTGTTACAGCCATTCCCTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTCCAGAGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCAGAAATTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTACTTGAGTCAGTTGATGATTTCATTCAGTCTCCTACGCCAATTAGTACACTGGACTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTATTATGACAAGAGTTCAAATTCATCTACCGCAACTCCTGGCGACAGAGTGGACAGCTCTGCTCTGAACATGTATGACACAGAATTGGAAGACTATGCTGACACTGTATCTCCATTTGGTGCATCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAATGTAATGAATTCATTGGATGAACAGCTACCTGTTCAAACCTTTAATGGCAACATTGTGAAATTAGAGTATGTTGACCAGGTTTGGACCCCTGATAGTGAAAATCAAACCATGTCTCTGTTGAATGTTACTCGGCCAGACTTCTTGCTTGCTTCAGATTGGTATGAGCTAGGTTCTGGGCATGGCAAGAACCAAGCCATCATGACTGATGCTACATCAACCCTTCTTGGAGATGATATAGCCACTGACTATAAACATATGACTGCTGGAACTTCTAAATCAAGTCAGGTGTTGATATCTCCTGGGCTGAGAAAGTTTTTATATGGGCGTGATTTATAG 1644 0.4294 MRRMKKEIEVEVLPNDQSESQLNDEGCEGSAYGVVLKKGPWTPAEDDILVDYVKKHGEGNWNAVHKHTGLLRCGKSCRLRWTNHLRPNLKKGAFTTEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQESQHGQNTCGINGGNKVHPDFLQKKSYEIHDAIFDSLKDNQGSLPYVPELHDISDYCNMLKGLDSSQFCFVPSTPSNHKRLRESTMPFLDSGGMNRNGFYPFDHIQDNTSDKIAQSFGMQSPLDLGPSSHSSICYSHSLSNGNSSTSKPTPEAVKSELPSLQYPEIDLGSWGTSPPPPLLESVDDFIQSPTPISTLDSDCSSPQNSGLLDALLYQAKTLSSSKNHYYDKSSNSSTATPGDRVDSSALNMYDTELEDYADTVSPFGASSILNECPAVSANVMNSLDEQLPVQTFNGNIVKLEYVDQVWTPDSENQTMSLLNVTRPDFLLASDWYELGSGHGKNQAIMTDATSTLLGDDIATDYKHMTAGTSKSSQVLISPGLRKFLYGRDL. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09582 547 Gene3D - 93 139 - -
Seca3g09582 547 CDD SANT 40 85 IPR001005 -
Seca3g09582 547 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Seca3g09582 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Seca3g09582 547 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Seca3g09582 547 Gene3D - 37 90 - -
Seca3g09582 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Seca3g09582 547 MobiDBLite consensus disorder prediction 382 399 - -
Seca3g09582 547 SMART sant 90 138 IPR001005 -
Seca3g09582 547 SMART sant 37 87 IPR001005 -
Seca3g09582 547 FunFam Transcription factor GAMYB 93 139 - -
Seca3g09582 547 CDD SANT 93 134 IPR001005 -
Seca3g09582 547 FunFam MYB-related transcription factor 37 90 - -
Seca3g09582 547 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 507 - -
Seca3g09582 547 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Seca3g09582 547 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Seca3g09582 547 MobiDBLite consensus disorder prediction 382 401 - -
Seca3g09582 547 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09582 Seca-Chr3 237125107 237131028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09582 26 527 MYB Transcription Factor Family AT3G11440 45.038 5.04e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g09582 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09582 K09422 - gmx:100810415 852.818