Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09581 ATGGCTGAGCGAGCATCCTTTGCCTACGATGTCTTCCTCAGCTTCAGAGGTAAAGATACACGATTAGGTTTTACTGGATACCTCTACAGTGCTCTCAGTCAAAGGGGAATCCATACCTTCTTTGATGATCCGGAGATTCGTAAAGGAGAGGAACTCACCCCAGCACTCCTCAAGGCAATTAAAGAATCCAGGATTGCCATCACTGTGCTCTCTAAAAACTACGCTTCTTCATCTTTTTGTTTAAAAGAACTTGCCGAAATCCTTGAGTGCTTCAAGGAGAAGAAGGATCGGCTAGTATTACCGGTTTTTTATGGGGTAGATCCTTGTGATGTGCGACACGAGAGAGGAAGTTATGGAGAAGCATTGGCTAAGCATGAGGAGAGGTTCAAGGATGATAAAGAGAAAGTCAACAGATGGAGGATGGCTCTACATCAGGCAGCTAACCTCTCCGGCTTTCCTTTCAAGCTTGGGGATGGATATGAATGTGAGTTTGTTGGGTCGATCGTTAAGGAAGTCTCCCGCAAGATTAATAGTACTCTTTTACATGTTGCTGATTACCCAGTTGGATTGGAGTCTCGAGTGGGTAAAGTAAAGTCTCTTCTGAATGTTAAGTCTAATCATGGAGTCCACATGGTAGGTATATGTGGAATTGGTGGAATAGGTAAAAGTACAATTGCTCGAGCAGTATATAATTCCATTAGTGACCACTTTGAAGGTTTCTGTTGTTTTCTCGAAGATGTGAGAGAGAATTCACGTAAATATGGCTTAGTACATCTCCAAGAGAAGGTTCTTTCTGAGATACTTGGAGAAAAGGATATTAAGTTAGGAGGTATGTGGAATGGTATGGCAGTAATACAGCATAGGCTCCAAAGTAAAAAGGTTCTTTTGGTTCTTGATGATGTTGACAAAAAAGAGCAGTTGCAGGCTATTGTTGGAGCACGTCAATGGTTTGGTATTGGTAGCACAATCATCATCACAACTCGGGACAGTGGTTTACTAGATATCCATGAGGATGTAAGAAAATATGAGGTGGAGGAGTTAAAAGATGAAGAAGCTCGTGATTTGCTTAGTTGGTATGCTTTTAAAACTAACAAAGATGATCCAAAGTACATCAAAATGTTAAACCGTGCAGTTGGTTATGCTTCTAGGCTCCCATTGGCTTTGAAAATAATAGGTTCCCACTTGTCTGGAAACAAAGATGAAGAAGAATGTAAACTTATATTAGATTGGTATGACAGTATTCCTGATGGAGAGATCCAAGCTGTACTAAGAGTAAGCTATGATTCCTTGGAGGGAAATGAGAAGCAAGTTTTTCTTGACATTGCCTGTTGCTTCGGAGGATACAAATTGTCAGATGTTGAAAATATACTTCATGCTCATCATGGTTTTTCGGAATCAAAAGAGCCTGGCGAACGCAGTAGGTTGTGGATCTGTGAAGATGTAGTCCGTATTTTAGAAGAAAAAAAGGGAACTAGCAAAATTGATATTTTAATTCTGGATTTCCCCAAAGATGAAGTACACTCAAAAGGACCCAATGGTGAAGAAGTGCAATGGGATGGAGAGGCCTTCAAGCAGATGAAAAACCTCAAAACACTTATTATTAGAAATGCTCACTTTTCCCAAGGCCCAACACATCTTCCAAATAGTTTAAGAGTATTAAAATGGTGGGGATATCCTTCACCATCTTTACCAGCTGAGATACCTGATGTATCTTGTGTCCCAAAGTTAGAAAAATTGTCATTTAAACACTGTGACAAGTTAACTAAAATTGATGTCTCAGTTGGACATCTGGGTAATCTTGAAATCTTGGATGCTTCTAGTTGCAAGAATCTTGAGACTTTTCCATCCATCAGATTGACCTCTCTTAAACAACTCAATCTTTCACATTGCTCAAATCTGAAGAGTTTCCCAGAAATATTGGGGAAGATGGAAAATATAACAGAGCTTCATGTAGTGGGGAGTCCTATAAAAGAATTGCCATCTTCCATTCAAAACCTTACTCGGCTTCAAAAATTAGAACTGCAATTCTGTGGAATAGTTCAGCTACCAAGTAGCATTGTCATGATGCCAAAACTGGGTATGATGCATGTTTCAAGATGTGAAGGGTTGCAATTATCTAAGCAGGGCAGAGCTGATGAAATGGAATCTTCGAATACAGAATGTCTTATTCTCTCATACTGTGATATATCTGATGAATTCCTTCCAATAGATACTTGGTTTGCCAATGTGAAAGATTTAAACCTATCAGGGAATAATTTCACAACTCTTCCTGCATGCATAAAAAATTGTCACCTTCTGAGAATCCTTAAGCTGGATGATTGCAGACTTCTACGAGAAATTAGAGGGATTCCAAGGAAATTAGAAATATTTTCTGCAAAAGGATGCACAGCCTTGAAATCCTTAGACCTCAAAGCTCTTCCTGCATGCTCTGAAGAATGTCACGATTTGAAGGAATTGATTTTGGATGATTCTTGGCATCTTAGAGAAATTCCAGGACTTACACCAAACTTGGATCATTTCTCTGCAAAAAACTGCACATACTTGACTCCCGAGCATAAAAGCATGCTGGTGAATCAGGAAATGGTAGAGGCTGGAAACAAGATGTTTGTTTTGCCTGGAACAAAGATTCCAGATTGGTTCACGCATCGTACAAGTAGAGGCTGGTCAATGTCTTTCTGGTTTCGTAACAAATTCCCTGTGATTTCTCTGTGTCTTGTTATTGGACTGATGAATGAGCAACCTATCACAGTCAAGTTTAGCCCCAGAATATTCATCAATGGCAAGAAACAGTCCCTTGCCAGTGGGAAAGTTTGCAAGTTCAACATAAGAACTGATCATATATTTTTGTTTGAAATACAGCTGCTAAATTTTGAAGATGATGTGGATTCAGAATCAGATACGGAGTGGAAACGTGTGGAGGTCTTGTATGCAGATCATATCACTGACAATGAAGTCCCAATTAGACGGGTTGCCAAACATGGTGGAATCCATGTATTAAAACAAACAAGTAGCATGAAGGATATTCAATTCATCGATTCAAATGTTCCAAACAAAAGAAAGACAAAATCATGTCAGGAATCCCCATATACACAGAATCAACTACATGTGGAGCACAGCAAGGAGCAGTTTTTATTGCATCCTGCACAAGCAACAGAAAATGTGAACTGTGATCCAGATTCAATGGAGGGGCCGAGTCAGACAGTTTCAAGAAAGAGACCCGGAAAAGACCAGAATATGCCTAGGGAAGATGCTGGAGGACAAACTTCAGAGAGGCTTCCTAAGGATGAAGATTTCATAGAGGATTCCAACACAGAAGGTTCCCACTCAGATGATCTCTTCCACCAGGTCAATGGAAAATACCCTGTTAGTGGCAAGGAAACCATATCTTGTGGGGCGAATTTTGGAGATGCATCTCTGATACCTATTAGAAAGGCTATTAGCGACTTAGAGCTGTTAATGGTTAATAAGGACCTATCTGAAGTCTCTTCTGATCCTGCCACGCGGTGTCAACTTCATAACCTCCTGGATACATTGAGCACAAGTAGCCATCCTAAGGTGACAGTAGAGGTGAAGAAGGCTATTGTCAAGTTCAAGATCAACTTTGCTGCTATTAAATCTGTGAACATGCTGAAGAATTCTGAGGCAGAAAGGAAGGAGGAGCTAGAGGCAGAAATTGAAACTTTAAAGAAACAATTAACTGCCAAAGAAAGGGACCTCCAACGACTTGTTTTGAATCTCAAAAATCAAGATGCAAAACTCTCAACCTGTTCAACGAATTGTGCTTCTCTCAAAGAGAAAACTCGAAAGCTATTAAAAGAAGTTGATGATATACTGGCTACACTAAGTGGAACGAAGGATATGGGTGAAGCCATTGAAGTGATGCAGAATAGGCTTCAGGATCAGGAGGCAACACTAGTCTCACCCTATTCAACGAGCTGTGCTCTGAACGAGCGAGCTCGGGCTAGATCACTATTAAAACAAGCTGATGATCTACTTGCTACAAGCAATGGAAATGGAATAGAGCATGATGGTGAAGCTGATGAAGAAGAGCAGAATGAGCTCAAGTGGACGTGGCCTACTGACCTATCTTACCAGCTTAATAAGATTAAAAGTAGCATTCTTGGATGA 4128 0.4026 MAERASFAYDVFLSFRGKDTRLGFTGYLYSALSQRGIHTFFDDPEIRKGEELTPALLKAIKESRIAITVLSKNYASSSFCLKELAEILECFKEKKDRLVLPVFYGVDPCDVRHERGSYGEALAKHEERFKDDKEKVNRWRMALHQAANLSGFPFKLGDGYECEFVGSIVKEVSRKINSTLLHVADYPVGLESRVGKVKSLLNVKSNHGVHMVGICGIGGIGKSTIARAVYNSISDHFEGFCCFLEDVRENSRKYGLVHLQEKVLSEILGEKDIKLGGMWNGMAVIQHRLQSKKVLLVLDDVDKKEQLQAIVGARQWFGIGSTIIITTRDSGLLDIHEDVRKYEVEELKDEEARDLLSWYAFKTNKDDPKYIKMLNRAVGYASRLPLALKIIGSHLSGNKDEEECKLILDWYDSIPDGEIQAVLRVSYDSLEGNEKQVFLDIACCFGGYKLSDVENILHAHHGFSESKEPGERSRLWICEDVVRILEEKKGTSKIDILILDFPKDEVHSKGPNGEEVQWDGEAFKQMKNLKTLIIRNAHFSQGPTHLPNSLRVLKWWGYPSPSLPAEIPDVSCVPKLEKLSFKHCDKLTKIDVSVGHLGNLEILDASSCKNLETFPSIRLTSLKQLNLSHCSNLKSFPEILGKMENITELHVVGSPIKELPSSIQNLTRLQKLELQFCGIVQLPSSIVMMPKLGMMHVSRCEGLQLSKQGRADEMESSNTECLILSYCDISDEFLPIDTWFANVKDLNLSGNNFTTLPACIKNCHLLRILKLDDCRLLREIRGIPRKLEIFSAKGCTALKSLDLKALPACSEECHDLKELILDDSWHLREIPGLTPNLDHFSAKNCTYLTPEHKSMLVNQEMVEAGNKMFVLPGTKIPDWFTHRTSRGWSMSFWFRNKFPVISLCLVIGLMNEQPITVKFSPRIFINGKKQSLASGKVCKFNIRTDHIFLFEIQLLNFEDDVDSESDTEWKRVEVLYADHITDNEVPIRRVAKHGGIHVLKQTSSMKDIQFIDSNVPNKRKTKSCQESPYTQNQLHVEHSKEQFLLHPAQATENVNCDPDSMEGPSQTVSRKRPGKDQNMPREDAGGQTSERLPKDEDFIEDSNTEGSHSDDLFHQVNGKYPVSGKETISCGANFGDASLIPIRKAISDLELLMVNKDLSEVSSDPATRCQLHNLLDTLSTSSHPKVTVEVKKAIVKFKINFAAIKSVNMLKNSEAERKEELEAEIETLKKQLTAKERDLQRLVLNLKNQDAKLSTCSTNCASLKEKTRKLLKEVDDILATLSGTKDMGEAIEVMQNRLQDQEATLVSPYSTSCALNERARARSLLKQADDLLATSNGNGIEHDGEADEEEQNELKWTWPTDLSYQLNKIKSSILG. 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09581 1375 PRINTS Disease resistance protein signature 288 302 - -
Seca3g09581 1375 PRINTS Disease resistance protein signature 211 226 - -
Seca3g09581 1375 PRINTS Disease resistance protein signature 381 395 - -
Seca3g09581 1375 PRINTS Disease resistance protein signature 617 633 - -
Seca3g09581 1375 MobiDBLite consensus disorder prediction 1053 1073 - -
Seca3g09581 1375 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 698 IPR044974 GO:0006952
Seca3g09581 1375 MobiDBLite consensus disorder prediction 1087 1108 - -
Seca3g09581 1375 Coils Coil 1204 1252 - -
Seca3g09581 1375 Gene3D - 177 342 IPR027417 -
Seca3g09581 1375 Gene3D - 346 431 IPR042197 -
Seca3g09581 1375 SMART till_3 8 149 IPR000157 GO:0007165
Seca3g09581 1375 Gene3D - 7 176 IPR035897 -
Seca3g09581 1375 MobiDBLite consensus disorder prediction 1053 1114 - -
Seca3g09581 1375 Gene3D Ribonuclease Inhibitor 506 863 IPR032675 -
Seca3g09581 1375 Pfam NB-ARC domain 191 409 IPR002182 GO:0043531
Seca3g09581 1375 SUPERFAMILY L domain-like 517 850 - -
Seca3g09581 1375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 441 IPR027417 -
Seca3g09581 1375 ProSiteProfiles TIR domain profile. 7 176 IPR000157 GO:0007165
Seca3g09581 1375 Pfam TIR domain 8 178 IPR000157 GO:0007165
Seca3g09581 1375 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 178 - -
Seca3g09581 1375 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09581 Seca-Chr3 237044693 237050389 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09581 9 704 WRKY Transcription Factor Family AT4G12020 27.667 7.97e-55 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09581 - - mtr:25501119 1372.07