Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09579 ATGGCAGGCTCCTGTATCTTCAGTTATAGATGGAAGTACGATGTATTCATCAGCTTTAGAGGTGAAGATACCCGCTTGGGTTTTACTTCACATCTCTACAGTGCTCTCAAAAATAGGGGAATCAATACCTTCATAAATGACGAATCCCTTCAAAGAGGAGAGGAACTCACACCAGCACTTGTAAATGAAATGGAAGAATCTAGGCTTGCCATCGTTGTACTCTCCAGGAACTATGCTTATTCTTCATTTTGTTTAAATGAACTTGCCACGATCCTTATGTGTTTTAAGGAAAAGGGTCGCCTGGTTTTACCAATTTTTTATGGCGTGGATCCCTCTGATGTGCAACATCAGAGAGGGAGTTATGGAGAAGCACTGGCTAAGCATGAGGAGAAGTTCAAGGATAATATGGAGAAGGTCAATAAATGGAGGATAGCTCTGGATCAGGCTGCCAATCTGTCCGGCTTCTATATCAAACTCGGGGATGCATATGAATATCAATTTATTGAGAAGATCGTTAGGTACGTCTGCAGCAAGATTAATCGCGCTCCTTTACATGTTGCTGATTACCCAGTTGGATTGGAGTCTCGAGTGGATAAAGTAATCTCGCTTCTGAATCTTGGGTCTGATGAAGTAGTCCACATGGTGGGGATCTATGGAATTGGCGGAATAGGTAAAACTGCAATTGCTCGCGCAGTGTATAATGTGATTAATGATGGGTTTGAAGGTTTGTGTTTTATTGATAATGTCAGAGAAATTTCTATCAAATATGGCTTAGTACATCTCCAAGAGATGGTTCTCTCCCAAATAATTGGAGACAAGGATATCAACATACAGAATGTGCAAGATGGAATTTCAATGATCAAGGGCATGCTCCAAAGGAAAAAGGTTCTTTTGGTTCTTGATGATGTTGACAGAATAGTGCAGCTTGAAGCTATTGCAGGAGGACTTGATTGGTTCTGTCGTGGCAGTAGAGTCATCATTACAACTCGGGACAAGCATTTGCTAGCAGTGCATGGGGTTGAAAAAACATATGAGGTTGAGGAATTAAAGAAGGAAGAAGCTCAAGATTTGCTCTGTTGGAATGCTTTCAAAAATGAAAACATTGATCCATGTCACACAGACATTTTAAACCGTGCAGTGACATATGCTTCTGGGCTTCCATTGGCTTTGGAAGTAATAGGCTCCCACTTGTTTGGAAAAAGTATAGAGGAATGGGAATCTGCATTTAAACAGTATGAACAAATTCCTGATAATAAGATCGAAAAGATACTCAAAGTAAGCTTTGACTCCTTGGAGGAAGATGAGAAGGAAATTTTCCTTGACATTGCATGTTTCTTTAATGGATATAAACTGGCAGAAGTTGAAGATATACTCTCTGCTCATTATGGCATCTCCATGAAGTATAGTATTGCAATGTTGATTGATAAATCTCTCATAAAGATCACTAATGATGGTCTTGTGACATTACATGACTTTATACAAGCCATGGGTAGGGAAATTGTTCGACAGGAATCACCAAAGGAGCCCGGCAATCGTAGTAGGTTATGGTCCTCTAAAGATGTAGTTGAAGTTCTAGAAAACAATACAGGTTCCAGTAGAATTGAAAGCTTAGTTTTGGATTTCCCCAAAGATGAATTACACTTGAATGGACCTGAAGGTGAAAAAGTAAATTGGGATGGAAAGGCCTTCATGAAGATGAAAAATCTCAAAACACTTATTGTTAGAAATTGTCATTTTTCCAAAGGCCCATCTCATCTTCCGCACAGTTTAAGAGTACTGAAATGGTGGAGATATCCTTCATCATCTTTACCTGCTAATTTTAGTGCAAAGAAACTTGCCATACTTGAGTTACCTGATAGCTCCTTGAAGATGAGCGATCCAATCCAGGCAAGTATCATGTGTAGGTTCATAAATCTCACAGTTTTGGATTTCAGCTACTGTGAATCATTAACTCATATACCTGATGTATCTGGCCTCACAAATTTAGAAAAATTATCTTTTAAGCGTTGTGAGAATTTAACTACCATTCATAAGTCAATTGGATTTCTGGATAAACTTAGAATCTTGGATGCTGTTTCTTGCATGAAGCTTAGGAGTTTTCCACCCATTAGATTGACCTCTCTTGAACTACTCAATCTTTCACAGTGCTCAACTCTTGAGAGTTTTCCAGAAATATTGGGGAAGATGGAAAATATAACAGAGCTTCATGTAATGGGGAGTCCCATAAAAGAATTGCCATTTTCAATTGGAAACCTCACTCGGCTTCGAAAATTAGAACTACAATTATGTGGAAAGGTTCAGCTACCAAGTAGCATTGTCATGATGCCAGAACTGAGTATGATGCATGTTTCAAGATGTGAAAGATTGTGGTTACCTAAGCTGGACCAAAGTAATGAAATGGTGTCTTCAAACACAGAACGTCTTATTCTCTCATACTGCAATATATCTGATGAATTCCTTCCGATAGACCTTAGTTGGTTTGCCAATGTGATAGATTTAAATCTATCGGGAAATAATTTCACAAAGATTCCTGCATGCTTCAAAGAATTTCAATTTTTGAGGAACCTTACGATGGATGATTGCAGGGGTCTACAAGAAATTAGAGGGATTCCATGGAAATTGGAATCACTTTCTGCAAAAGGATGCACATCTTTGAAAGACTTGGACCTCACAGTTCTTCCTGATTTCCCTAAAGAACATCACTCTTTAAGGGAACTTATTTTGGATGATTGTGTGTATCTTCAAGAAATTAGAGGGGTACTGCCAAACTTGGATCATTTTTCTGCGAAAGACTGTACATTCTTGACTTCGTGGTGTACAAGCATCTTACTGAATCAGGAAGCAGTAGAGGCTGGAAACAAGATGTTTGTTTTGCCAGGATCAAAGATTCCAGAGTGGTTCACATACTGTGCCAGGGGAGGGTCAATTTCTTTCTGGTTCCGTAATAAATTTCCTAGCATTTCTCTCTGTTTTGTTATTAGACTGGTGGGAGAGCATCCTGTCATGGTCATGTTTAGTCCTATTGTATTCATCAATGGCAAAAAACAGGTCCTTGCTAGTCAGAAAGTCTACAAGTTCACGATAGCAACAGATCATATATTTTTATTTGATCTACAGCTGCCAAAATTTGAAGATAATGTGGACATGGTATGTTCAGGAAAAGAGTGGAGTCGTGTGGATATTTCGTATTCAGATCATATTACCAAGGATGATGTCCCAATCAAAGTGGTTACCAAAGAAATTGGAATCCATGTTAAACAAACAACTAGCATGGGGGATATCCTATTCATTGATCCATACTTTAGAAAAAGAAAATCAGATGATTTTCTCTTAACGTGGGAATCAATGGAGGGGCCATCACGTCAAAGAGTACAGACCTCGTTACAAAGACCTCGGGAAACCCTGACTATCATGGTGCCATCTTCATCAATTCTCACATCAACCCCACCTCTACCTGCTGAGGCTGAAAAAGGTCAAGCCTCTCCACCAACACCTTCATTTAGGTTGTTTTTGGATGATGAAGATAATTCTACTGCAATTCAAAATGATTGGCTTGTCAATGAAGAAGGTATTGCGAGCAATGATTTTGAAGCATTTCCTGAATTTGTATTGGAGAAGTCTTATCTGGAGTGTGAAGATTTGGACTCAGATGATCCCTTTGACCAGGTCAATATAAAACTCTCTGTTAGTGGGAGCGGATCCATATCTCCTGGGGAGAGTTCTGGAGATGGATCTCTAAGATCTATTCAAGGGGTCATGGATGAATTAGAGTTGGTAATGGTCAAGGACTTATCTGAAGTCTCTTCTAATCCTGCCACACAGTGGCAACTTGATCACCTTCTGGATCAATTGATTACAAGTGGCCACCCTAAGGTGACAGTTGAGGTGAAGGAGGCTCTTGTCGAGTTCAAGAGAAAGGCTCACGAGTCATTCCAAGAATTCCAAGCTACTGTTGAGTCTGTGAACAAACTTAAGAATTTTGAGAAGCATCTGGCCAGAATTCAGCAGGAGACTGATGCAGGCAAGGGTCGATGGAAGGACCTCAAAAACTCAATAAGAAAGGCTTCTTTGGCCTTGAATGCCGAAAATAGTAGGAAGGAGGAACTAGAAGCAGAAATTGCAACTTTAAGGAAACAACTAGCTACCAAAGAAAGGGACCTAGAACAACTTGTGTTGAAGGTCAAGAATCAGGAGGCAACATTCTCTGCCTATTCAACAAGATTTGCTTCTCTCCACGAGCAAGCTCGAGCTCTATCAAAAGAAGCTGATGATCTACTTGCTGCAAGCAGTGGGATAAAGCATGAGGGTGAAGCCGCTGAAATGAATCAGAACCGGCTCAAGTCGACCTGGTCTTCTGACTTAATTAGCCAGTTTATCAAGATTAGGAAGATGATTCTTGGCCGTTATGATTAG 4413 0.3986 MAGSCIFSYRWKYDVFISFRGEDTRLGFTSHLYSALKNRGINTFINDESLQRGEELTPALVNEMEESRLAIVVLSRNYAYSSFCLNELATILMCFKEKGRLVLPIFYGVDPSDVQHQRGSYGEALAKHEEKFKDNMEKVNKWRIALDQAANLSGFYIKLGDAYEYQFIEKIVRYVCSKINRAPLHVADYPVGLESRVDKVISLLNLGSDEVVHMVGIYGIGGIGKTAIARAVYNVINDGFEGLCFIDNVREISIKYGLVHLQEMVLSQIIGDKDINIQNVQDGISMIKGMLQRKKVLLVLDDVDRIVQLEAIAGGLDWFCRGSRVIITTRDKHLLAVHGVEKTYEVEELKKEEAQDLLCWNAFKNENIDPCHTDILNRAVTYASGLPLALEVIGSHLFGKSIEEWESAFKQYEQIPDNKIEKILKVSFDSLEEDEKEIFLDIACFFNGYKLAEVEDILSAHYGISMKYSIAMLIDKSLIKITNDGLVTLHDFIQAMGREIVRQESPKEPGNRSRLWSSKDVVEVLENNTGSSRIESLVLDFPKDELHLNGPEGEKVNWDGKAFMKMKNLKTLIVRNCHFSKGPSHLPHSLRVLKWWRYPSSSLPANFSAKKLAILELPDSSLKMSDPIQASIMCRFINLTVLDFSYCESLTHIPDVSGLTNLEKLSFKRCENLTTIHKSIGFLDKLRILDAVSCMKLRSFPPIRLTSLELLNLSQCSTLESFPEILGKMENITELHVMGSPIKELPFSIGNLTRLRKLELQLCGKVQLPSSIVMMPELSMMHVSRCERLWLPKLDQSNEMVSSNTERLILSYCNISDEFLPIDLSWFANVIDLNLSGNNFTKIPACFKEFQFLRNLTMDDCRGLQEIRGIPWKLESLSAKGCTSLKDLDLTVLPDFPKEHHSLRELILDDCVYLQEIRGVLPNLDHFSAKDCTFLTSWCTSILLNQEAVEAGNKMFVLPGSKIPEWFTYCARGGSISFWFRNKFPSISLCFVIRLVGEHPVMVMFSPIVFINGKKQVLASQKVYKFTIATDHIFLFDLQLPKFEDNVDMVCSGKEWSRVDISYSDHITKDDVPIKVVTKEIGIHVKQTTSMGDILFIDPYFRKRKSDDFLLTWESMEGPSRQRVQTSLQRPRETLTIMVPSSSILTSTPPLPAEAEKGQASPPTPSFRLFLDDEDNSTAIQNDWLVNEEGIASNDFEAFPEFVLEKSYLECEDLDSDDPFDQVNIKLSVSGSGSISPGESSGDGSLRSIQGVMDELELVMVKDLSEVSSNPATQWQLDHLLDQLITSGHPKVTVEVKEALVEFKRKAHESFQEFQATVESVNKLKNFEKHLARIQQETDAGKGRWKDLKNSIRKASLALNAENSRKEELEAEIATLRKQLATKERDLEQLVLKVKNQEATFSAYSTRFASLHEQARALSKEADDLLAASSGIKHEGEAAEMNQNRLKSTWSSDLISQFIKIRKMILGRYD. 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09579 1470 Gene3D - 8 178 IPR035897 -
Seca3g09579 1470 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 181 - -
Seca3g09579 1470 Gene3D - 1292 1468 - -
Seca3g09579 1470 PRINTS Disease resistance protein signature 214 229 - -
Seca3g09579 1470 PRINTS Disease resistance protein signature 290 304 - -
Seca3g09579 1470 PRINTS Disease resistance protein signature 383 397 - -
Seca3g09579 1470 PRINTS Disease resistance protein signature 703 719 - -
Seca3g09579 1470 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 776 IPR044974 GO:0006952
Seca3g09579 1470 Pfam NB-ARC domain 194 431 IPR002182 GO:0043531
Seca3g09579 1470 Pfam C-JID domain 958 1063 IPR045344 -
Seca3g09579 1470 Pfam TIR domain 12 177 IPR000157 GO:0007165
Seca3g09579 1470 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 155 IPR035897 -
Seca3g09579 1470 ProSiteProfiles TIR domain profile. 11 179 IPR000157 GO:0007165
Seca3g09579 1470 Gene3D - 348 432 IPR042197 -
Seca3g09579 1470 SUPERFAMILY L domain-like 492 918 - -
Seca3g09579 1470 SMART till_3 12 152 IPR000157 GO:0007165
Seca3g09579 1470 MobiDBLite consensus disorder prediction 1143 1163 - -
Seca3g09579 1470 Gene3D - 179 342 IPR027417 -
Seca3g09579 1470 Gene3D Ribonuclease Inhibitor 722 972 IPR032675 -
Seca3g09579 1470 Gene3D Ribonuclease Inhibitor 558 721 IPR032675 -
Seca3g09579 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Seca3g09579 1470 Coils Coil 1352 1400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09579 Seca-Chr3 237010132 237016163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09579 7 786 WRKY Transcription Factor Family AT4G12020 32.503 1.56e-88 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09579 - - mtr:25501119 1545.41