Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09578 ATGGGCATGGCTGGGAAAGCATCCTTTTCATACGATGTCTTCCTCAGCTTCAGCGGTGAAGATACTCGATATGGTTTTACTGGATATCTCTACAATGCTCTCAGTCAAAGAGGAATCAATTGCTTCATTGACGACAAGGAGCTTCGAAAAGGGGAGGAACTCACACAAGGACTTGTCGAGGCAATTAAAGAATCCAGGATTGCCATCATTGTGCTTTCTAAGAACTATGCCTTTTCTTCATTTTGTTTACAGGAACTCACCACGATCCTTGAGTGCTTCAACGAGAAGAAGATTCGGTTTGTTATACCAGTTTTTTATAAGGTCGATCCCTCTGATGTGCGAAAAGGGACAGGCAGTTATGGCGAAGCATTGATCGCGCAGAAGAAGAAGTTCAAGGATGATGAGAAGAAGGTCAGCACACGGAGAGAGGCTCTACAACAGGCAGCTAACATTGCCGGCTTTCATTATAGGGATGGATTATATGAATATGAATTTGTTGAGAAGATTGTTAGTCAAGTCTCCAGCAAGATTGGCCGTAGAATACATGCTACTAATTACCCAGTTGGATTGACACCTCGAGCGGATAAAGTAATATCGCATCTGAAACTTGAGTCTGATAAAGGATTCCACATGGTGGGGATCTATGGATGTGGGGGAATAGGCAAAACTACAATTGCTCGAGAAGTGTATAACTCGATTAGTGACAATTTTGATGGTTCATGTTTTCTTGAAGATGTAAGAGAGAATTCACGTAAAAATGGCTTAGTACATCTCCAAAAGACGGTTCTTTCTGACATACTTGGAAATAAGGATATACAGTTAAGAAATGAGATGGATGGAGAGTCAACAATAAAGCAAAGGCTTGGCAACAAGAAGGTTCTTTTGGTTCTTGATGATGTTGACCAGAAAGAACAGTTGCAGAAGATTGCTGGAGACCATGATTGGTTTGGTGTTGGTAGCAGAGTCATCATTACAACTCAGAACAGTGGTTTACTAAAAATCCATGGGGATATAAGTAAATATGAGGTGGAGTTGTTTAGCGATGAAGAAGCTCGTGAACTGCTTAGTTGGAATGCTTTTAAAACTAACAAAGTTGATCCAAAGTACAGCGAGATTTTAAACCGTGCAGTGCGTTATGCTTCTGGCCTTCCATTGGCTTTGACAGTAATAGGTTCCGATTTACGTGGGAAAGAAAAAGAAGAATGTGAACTTATATTAGCTCAGTATGGCAGTATTTCTGAAAAGAAGATCCAAAATATACTTAAAGTAAGCTTTGATTCCTTGGACAATGAAGAGAAGAAAATTTTTCTTGACATTGCTTGTTGCTTTGGAGGGTATAAATTGTCTGATGTTGAAGAAATACTTCATGCTCATCATGGTTCGTCAATGAAACCTTGTATTGATCTGTTGATTGAAAAATCTCTAATAAGAATTGATGATGGTCTTGTGACATTACAAGGGTTGATACAAGATATGGGTAGAGAAATTGTCCAACAAGAAGCATCAGAACCTGGCAAACGTAGTAGGTTATGGTCCTATGAAGATGTAGTTCAAGTTTTACAAGAAAATGCGGGAACTAGCAAAATTCAAATCTTAGTTCTGGATTTCCCCAAAGATGAAGCACACTCAAAAGGACCTGAATGTGAAGAAGTACATTGGGATGGAGAGGCCATCAAGAAGATGAAAAACCTCGGAACACTTATTATTAGAAATGGTTGTTTTTCCATTGGCCCCAAACATCTTCCAAATAGTTTAAGAGTGTTAAAATGGTCAGGATATCCTTCCCAGTCTTTACCAAGTTGTTTTAATCCAAAGAAACTCTCCATACTTGAGTTACCTGAGAGTCACTTGAAGTCATGTCAACAAATTCAGGCAAGTACTAATAAGTACACATATTTGAGAGTTTTGGATTTTGCCTACAGTGAATTTGTAACTGAGATACCTGATGTAACTGGCGTCCCAAATTTAGAAAAATTATCATTTAGACATTGTGAGAATTTAACTAAAATTCATGACTCAGTTGGATATCTGGGAAATCTTAAAATCTTGGATGCTGTTAGCTGCAAGAATCTTAAGGCTTTTCCACCCATCATATTGATCTCTCTTGAACAACTCAATCTTTCACGTTGCTCAAGTCTTGAGAGCTTCCCAGAAATATTGGGGAAGATGGAAAATATAAAAGAGCTTCATATAGCAGAGACTCCCATAAATGAATTGCCACCTTCAATTCAATACCTTACACAGCTTGGAAAATTAGAACTGCAACTCTGTGGAATGGTCCAGTTACCAAGTAGCATTGTCATGTTGCCAGAACTGGCTTTGATGCATGTTTCGAAATGTCGAAGTTTGCAATTATCTAAACAGGACAAAGGTGAAGAAATGGTGTCTATGTCTTCAAACACAGAATGTCTTACTCTCTCATGCTGCAATATTTCAGATGAATTTTTTCCAATGGGTCTCACATGGTTTGCCAATGTGAAAGATTTAAACCTATCCGGGAATAGTTTCAAAATCCTTGATGCATGCTTCAAAGAATGTCACTATTTGAGGAACCTTAACCTGGATGATTGTGTGCGTCTAGAAGAAATTAGAGGGATTCCACGGGTTTTAGAAACATTTTCTGCTAAAGGATGCACGTCCTTGAGATCCTTAGACCTCACAGTTCTTCCTGCATATACCAGTGAATGTCTCTCTCTAAAAGAACTTATTTTAGATGATTGCGTGTATCTTCAAGAAATTAAAGGGGTTCTGCCAAACTTGGATCATTTCTCTGCCAAAAACTGCACATCCTTGACTTCCAGGTGTACAAGCATGTTAATGAATCAGGAATCAGTAGAAGCTGGAAACAAGATGTTTTCTTTGCCAGGAACAAAGATTCCAGAGTGGTTTGCATGCAGCAGAAGGGGAGATTCAACATTGTTCTGGTTCCGAAGAAAATTCCCCGCAATTTCTCTTTGTCTTGTGATTGGACCTATGGATGAGAAACGTATCACAGTCAAGTTTAGCCCCAGAGTATTCATCAATGGCAATGAACAATCCCTTGCCAGTAGGAAAGTTTACGAGTTCAGGATAGCCACAGATCATATATTTTTGTTTGATATACAGCTGCTAAAATTAGAAGATGATGTGTTCATGGTATGTTCAGAAAAAGAGTGGAATCGTGTGCAGGTCTCATATGCAGATCATATGACGGACAATTTGCACCAAATTGGACATGTTGCCAAACACAGTGGAATCTATGTCTTTAAACAAACAAGCATGGAGGATATTCAATTCTCTGATCCAAACGATAGAAAGAGAAAATCACCTTGGGAAACAATAAGGCAGTTGAAAGAAAAGCATAGATTGACGGGCATTAGAGTTTCTGAGACCCAATATACACAGAATGAACAACATGGGGCTCTATTGACATTGCATGTGGAGAACAGCAAGGAGCAGTTTTCATCGCATTCTGCACAAGCAATGAAAAATGTGAATTGCAATCCAGATTCAATGGAGGGGGCGGATGAAATAACTAAGAGGAAGAGACCACGGAAAGACCAGAATATGGTGCAAACCATATCTTGTGGGACGAGTTCTGGAGATGCATCTCTAAGGTCTATTAGAGAGGCTATCAATGACTTGGAGCTGTTAACGGTTAAGGACTTATCTGAAGAATCTTCTGAGTCTGCTATGCAGTCTCGACTTGACCACCTCCTGGTTCTTTTGAGCACAAGTAGCCACCCTGAGGTGACAGTAGAGGTGAAGGAAGCTATCGTTGAGTTCAAGACAAAGGCCTCTGCTACTGTTGAGTCTGTTAACAAACTGAAGAATTTTGAGAAGCACAGGGCTACAATTCAGCGAGAGACTGTCACAAGAGTCATGGGCAAGGGTCGACGGATTGACCTCAAGAACTCAAAGAAAAAGGTTTCTGGGGCCATCAAGGCAGAATATAAAAGGAAGAAGGAGCTAGAGGCAGAAATTGAAACTTTAAAGAAACAACTAGCTGCCAAAGAAATGGACCTCCAACAACTTGTGTTGAATCTCAAGAATCGGGAAGCAAAACTCTCAACCTGTTCAACGAATTGTGCTTCTCTCAAGGAGCAAGCTCGAAAGCTGTTAAAAGAAGCTGATGATCTACTCACTGAATAA 4131 0.397 MGMAGKASFSYDVFLSFSGEDTRYGFTGYLYNALSQRGINCFIDDKELRKGEELTQGLVEAIKESRIAIIVLSKNYAFSSFCLQELTTILECFNEKKIRFVIPVFYKVDPSDVRKGTGSYGEALIAQKKKFKDDEKKVSTRREALQQAANIAGFHYRDGLYEYEFVEKIVSQVSSKIGRRIHATNYPVGLTPRADKVISHLKLESDKGFHMVGIYGCGGIGKTTIAREVYNSISDNFDGSCFLEDVRENSRKNGLVHLQKTVLSDILGNKDIQLRNEMDGESTIKQRLGNKKVLLVLDDVDQKEQLQKIAGDHDWFGVGSRVIITTQNSGLLKIHGDISKYEVELFSDEEARELLSWNAFKTNKVDPKYSEILNRAVRYASGLPLALTVIGSDLRGKEKEECELILAQYGSISEKKIQNILKVSFDSLDNEEKKIFLDIACCFGGYKLSDVEEILHAHHGSSMKPCIDLLIEKSLIRIDDGLVTLQGLIQDMGREIVQQEASEPGKRSRLWSYEDVVQVLQENAGTSKIQILVLDFPKDEAHSKGPECEEVHWDGEAIKKMKNLGTLIIRNGCFSIGPKHLPNSLRVLKWSGYPSQSLPSCFNPKKLSILELPESHLKSCQQIQASTNKYTYLRVLDFAYSEFVTEIPDVTGVPNLEKLSFRHCENLTKIHDSVGYLGNLKILDAVSCKNLKAFPPIILISLEQLNLSRCSSLESFPEILGKMENIKELHIAETPINELPPSIQYLTQLGKLELQLCGMVQLPSSIVMLPELALMHVSKCRSLQLSKQDKGEEMVSMSSNTECLTLSCCNISDEFFPMGLTWFANVKDLNLSGNSFKILDACFKECHYLRNLNLDDCVRLEEIRGIPRVLETFSAKGCTSLRSLDLTVLPAYTSECLSLKELILDDCVYLQEIKGVLPNLDHFSAKNCTSLTSRCTSMLMNQESVEAGNKMFSLPGTKIPEWFACSRRGDSTLFWFRRKFPAISLCLVIGPMDEKRITVKFSPRVFINGNEQSLASRKVYEFRIATDHIFLFDIQLLKLEDDVFMVCSEKEWNRVQVSYADHMTDNLHQIGHVAKHSGIYVFKQTSMEDIQFSDPNDRKRKSPWETIRQLKEKHRLTGIRVSETQYTQNEQHGALLTLHVENSKEQFSSHSAQAMKNVNCNPDSMEGADEITKRKRPRKDQNMVQTISCGTSSGDASLRSIREAINDLELLTVKDLSEESSESAMQSRLDHLLVLLSTSSHPEVTVEVKEAIVEFKTKASATVESVNKLKNFEKHRATIQRETVTRVMGKGRRIDLKNSKKKVSGAIKAEYKRKKELEAEIETLKKQLAAKEMDLQQLVLNLKNREAKLSTCSTNCASLKEQARKLLKEADDLLTE. 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09578 1376 Coils Coil 1356 1376 - -
Seca3g09578 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 439 IPR027417 -
Seca3g09578 1376 SUPERFAMILY "Winged helix" DNA-binding domain 415 521 IPR036390 -
Seca3g09578 1376 Coils Coil 1307 1348 - -
Seca3g09578 1376 Gene3D - 346 429 IPR042197 -
Seca3g09578 1376 Gene3D - 179 338 IPR027417 -
Seca3g09578 1376 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 154 IPR035897 -
Seca3g09578 1376 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 179 - -
Seca3g09578 1376 Pfam TIR domain 11 176 IPR000157 GO:0007165
Seca3g09578 1376 ProSiteProfiles TIR domain profile. 9 177 IPR000157 GO:0007165
Seca3g09578 1376 Gene3D Ribonuclease Inhibitor 540 794 IPR032675 -
Seca3g09578 1376 Gene3D Ribonuclease Inhibitor 795 953 IPR032675 -
Seca3g09578 1376 PRINTS Disease resistance protein signature 287 301 - -
Seca3g09578 1376 PRINTS Disease resistance protein signature 211 226 - -
Seca3g09578 1376 PRINTS Disease resistance protein signature 380 394 - -
Seca3g09578 1376 PRINTS Disease resistance protein signature 697 713 - -
Seca3g09578 1376 SUPERFAMILY L domain-like 556 932 - -
Seca3g09578 1376 SMART till_3 10 151 IPR000157 GO:0007165
Seca3g09578 1376 Pfam NB-ARC domain 194 401 IPR002182 GO:0043531
Seca3g09578 1376 Gene3D - 5 178 IPR035897 -
Seca3g09578 1376 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 789 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09578 Seca-Chr3 236992771 236999107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09578 7 784 WRKY Transcription Factor Family AT4G12020 30.025 6.24e-71 261