Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09574 ATGGAAGGAGGGTTGGGTCCAAATTCAAACCCTGCGTCAGGTTCAATTGATAGATCTAAAATTGTAGAGGCAAAACCTCTGCGTAGTTTGGCACCTGTGTTCCCAAAATCTCTTCAATCTTTCTTTTCTGGCCGGTATCCATCTGGTTTTCCTCCATTTATTTCATCAGAGGAACCTCAAGAACCTCCTATTCCCAAACCTGCTCCACTAAGGTGCTACAGGAGTTCATCAGTTGAAGAAGCAACCCCAGATGGAGTTAATGGAGTTAATGCTTCATCTGTAGATGGGTTCAATGGTGACCATGTTGCTGATAACAAAAAGCGTGCAGCATCACCTTTACAGAGCTGCAAATCATCCCAAAAGAGGAATAAGAAAACTCAGGAGTCACAGGTTAATCATCCAAGTTCTTTTGTTGGTATTAACCTAGCCCAAAAAGATGATGGCGATCGTGAAGCAGTTAATCTTGTACTCATGACATTTGACTCACTCCGAAGAAGGCTCTGCCAACTCGAAGATGCTAAGGAATTGAACACAACAGGTGCAATCAAGCGTGCAGATTTAAGAGCAAGCAATGCTTTGACGTGCAATGGGGTTCGGACAAATACAGTGAAGAGAGTGGGGGTGGTGCCCGGGGTTGAGATTGGGGACATTTTCTTTTTTCGAATGGAAATGTGTCTTGTGGGCTTACATGGCCAGTCAATGAGTGGAATTGACTACATGACTATCAAGGATGAGAATCAGGAGGAACCTGTGGCCATAAGCATTGTTTCATCAGGAGTATATGATAATGATGCAGAGGATAATGATGTTTTAATTTATAGTGGTCAGGGAGAGAATTTCAACAAGAAAGATAAATATGTGACTGATCAAAAGCTCCAAAGGGGTAATCTTGCTTTGGACAAAAGTTCGAGGCGACACAATGAAGTAAGAGTCATCCGGGGCTTGAGAGATGCTACAAATAAAACTGCAAAAATCTATGTGTATGATGGTCTTTATAAAATCCAAGATTCTTGGATAGAAAGGGGCAAATCCGGTGGTGGTGGTGGTGTATTTAAGTATAAGTTCGTGAGGTTGCCTGGACAACCCAGTGCTTTTGCTAATTGGAAATTGGTTCAGAAGTGGAAGGAAGACTCTGCTTCAAGGAATGGCTTTATTCTTGCAGATCTCTCCACAGGAGTTGAGAGTATACCGGTATCACTGGTCAATGATGTTGATAATGAGAAAGGGCCTGCATTTTTCACTTATTTCCATTCTCTCAGAAATCCAAAACCTTTTGGTTTAATGCAGCCTTCGTATGGCTGCAATTGTAACAAAGCATGCGTCCCAGGAGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGATTTTCCATACACAGCAAATAGTATACTAGTGAGTCGGAAGCAATTAGTGCATGAATGTGGCCCTATGTGTCGTTGTCTTCCTAACTGCAAAAATCGAGTATCCCAGGCAGGTTTAAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGAGGGTGGGGACTTCGATCATTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAAGGTATATCATAACGATGAGTATGTTTTTGATACAAGTCGTATTTATGAACCATTCAAGTGGAATCATGAACCTAGCTTACTGGAAGAAGTAAGTTCAAATGTATCTAGTGAGGATTATGCTATACCATCTCCTCTAATAATAAGTGCCAAGGATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAACGTTTTCTGGCAGCCACTCCTGCATGCAGAAAACAATCAATCCTTTCTTCACATTGCATTTTTTGCCCTTAGACACATTCCTCCAATGACAGAGTTAACATATGATTATGGCGTTGTCCGTTCTGGTCATGTTGAGGGTAGCAGTGCACCCAAAGGGAGAAAGAAGTGCTTGTGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA 2007 0.4185 MEGGLGPNSNPASGSIDRSKIVEAKPLRSLAPVFPKSLQSFFSGRYPSGFPPFISSEEPQEPPIPKPAPLRCYRSSSVEEATPDGVNGVNASSVDGFNGDHVADNKKRAASPLQSCKSSQKRNKKTQESQVNHPSSFVGINLAQKDDGDREAVNLVLMTFDSLRRRLCQLEDAKELNTTGAIKRADLRASNALTCNGVRTNTVKRVGVVPGVEIGDIFFFRMEMCLVGLHGQSMSGIDYMTIKDENQEEPVAISIVSSGVYDNDAEDNDVLIYSGQGENFNKKDKYVTDQKLQRGNLALDKSSRRHNEVRVIRGLRDATNKTAKIYVYDGLYKIQDSWIERGKSGGGGGVFKYKFVRLPGQPSAFANWKLVQKWKEDSASRNGFILADLSTGVESIPVSLVNDVDNEKGPAFFTYFHSLRNPKPFGLMQPSYGCNCNKACVPGDLSCSCIQRNEGDFPYTANSILVSRKQLVHECGPMCRCLPNCKNRVSQAGLKHHMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDRAKVYHNDEYVFDTSRIYEPFKWNHEPSLLEEVSSNVSSEDYAIPSPLIISAKDVGNVARFMNHSCSPNVFWQPLLHAENNQSFLHIAFFALRHIPPMTELTYDYGVVRSGHVEGSSAPKGRKKCLCGSSKCRGSFG. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09574 668 ProSiteProfiles Pre-SET domain profile. 432 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g09574 668 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 74 668 IPR025794 GO:0016571
Seca3g09574 668 Pfam Pre-SET motif 390 488 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g09574 668 SMART G9a_1 202 361 IPR003105 -
Seca3g09574 668 ProSiteProfiles YDG domain profile. 207 357 IPR003105 -
Seca3g09574 668 MobiDBLite consensus disorder prediction 49 136 - -
Seca3g09574 668 ProSiteProfiles SET domain profile. 496 637 IPR001214 GO:0005515
Seca3g09574 668 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 190 376 - -
Seca3g09574 668 SMART preset_2 386 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca3g09574 668 SUPERFAMILY SET domain 395 665 IPR046341 -
Seca3g09574 668 SMART set_7 496 643 IPR001214 GO:0005515
Seca3g09574 668 Pfam SAD/SRA domain 206 361 IPR003105 -
Seca3g09574 668 Gene3D SET domain 378 667 IPR046341 -
Seca3g09574 668 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 64 662 - -
Seca3g09574 668 SUPERFAMILY PUA domain-like 192 378 IPR015947 -
Seca3g09574 668 Gene3D - 189 375 IPR036987 -
Seca3g09574 668 Pfam SET domain 507 637 IPR001214 GO:0005515
Seca3g09574 668 ProSiteProfiles Post-SET domain profile. 652 668 IPR003616 -
Seca3g09574 668 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09574 Seca-Chr3 236908985 236910991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09574 139 668 Su(var)3-9 homologs AT5G04940 60.976 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g09574 SAD_SRA 3.6e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09574 K24405 - gmx:100800651 1056.59