Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09569 ATGTCTTCCTTAAAGGCCTACGGTAAAGTTGATGAAGCAGACCAAGCAATGCTTGAAGTTCGTAGGAAAACCCGAAAACGAATCACCATCATAAGCTTGTCCACTATTGTCCCTATTGGTGTTGTTTGTGCTGCTGTTTTTGGAACCATTGCTCACAATAATGGCCATGATGATGATGACAACAACAATGCTCAATCTCTTTCAAGTAATTCGGTGGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGACTCATGCTATAGCAGCCTCAGTCCTCTTGTTCATTCGGGTCATGTTCAACCTCAGGAGCTCTTCTTGTTGTCCATCCAAGTGGCCTTCAATGAGGTTTCAAGAGCTCTTCAGTATTTCTCTGAGCTGGGAGATTTTAAGGGGTTGAGTGTGGATAATAGGACCAAGGAAGCTTTGAAAAACTGTGGGGATCTTTTGAGTCTTGCTGCTGATCATTTGAATAGCTCTTTGTCTTCTGGGGGAAAGTCTTCATTGCTTGATGTCTTGGAGGATCTTAAAACTTGGTTGAGTGCTTCAGGTACATACCAACAGACTTGCATTGATGGCTTTGATGAGGCAGGAGAAGCATTAAAGTCAAGTGTTTTAAGCAATCTAAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATCATTACTTGGCTTAACAATGCTGCAACCACAGTGAACTTGAGGCGCTTGTTGACTTTGCCTAATCAGAATGAAGAACCAAAGTGGCTTCATTCTAAAGACCGGAAGCTACTTCAAACAGATGATTTGAAGAAGAAAGCTGACATTGTTGTTGCCAAAGATGGCAGTGGAAAATACAAAACAATCTCTGATGCACTTAAACATGTCCCTGAAAAAAGTGACAAGAGAACTGTGATCTATGTGAAGAGAGGGACTTACTATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCTACAATTGTGTCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCTGTATTTGGGAAGAATTTCATGGCTAGGGATATGGGATTTCGTAACACAGCTGGTGCAGAGAAGCACCAAGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTTCTATAGGTGTCAAATGGATGCATATCAGGACACTCTCTATGCTCAATCAAATCGCCAATTCTATAGGGAATGCAACATTTATGGAACAGTTGATTTCATTTTTGGCAACTCTGCAGTTGTCTTACAAAACTGCAACATTTTGCCAAAGCTGCCTATGCAGGGCCAACAGAACACAATCACAGCACAAGGCAAAACTGACCCTAATATGAACACAGGAATTTCAATTCAAAATTGCAACATTTCACCCTTTGGAAACTTGAGTTCTGTCCAAACATACCTTGGAAGACCATGGAAGAATTACTCAACCACAGTGTTTATGCAATCCACATTGGGAAGTTTCATTAACCCAAATGGATGGTTACCTTGGGTAGGTAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTCAAGTGGAAGGGTGTGAAAAGCATTACCATAAAACAAGCTAGCAAGTTTACTGTGAAGTCCTTTCTTTCAGGAGACAGATGGATTCCTGCTTCGGGTGCTCCCTTTAAACCTTCTATGTGA 1725 0.4133 MSSLKAYGKVDEADQAMLEVRRKTRKRITIISLSTIVPIGVVCAAVFGTIAHNNGHDDDDNNNAQSLSSNSVVKAVCDVTLYKDSCYSSLSPLVHSGHVQPQELFLLSIQVAFNEVSRALQYFSELGDFKGLSVDNRTKEALKNCGDLLSLAADHLNSSLSSGGKSSLLDVLEDLKTWLSASGTYQQTCIDGFDEAGEALKSSVLSNLKNSTEFTSNSLAIITWLNNAATTVNLRRLLTLPNQNEEPKWLHSKDRKLLQTDDLKKKADIVVAKDGSGKYKTISDALKHVPEKSDKRTVIYVKRGTYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFMARDMGFRNTAGAEKHQAVALMTSADQAVFYRCQMDAYQDTLYAQSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPKLPMQGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVQTYLGRPWKNYSTTVFMQSTLGSFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGVKSITIKQASKFTVKSFLSGDRWIPASGAPFKPSM. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09569 574 Gene3D - 263 574 IPR012334 -
Seca3g09569 574 FunFam Pectinesterase 69 226 - -
Seca3g09569 574 CDD PMEI-like_3 75 225 - -
Seca3g09569 574 Pfam Plant invertase/pectin methylesterase inhibitor 72 221 IPR006501 GO:0004857
Seca3g09569 574 NCBIfam pectinesterase inhibitor domain 68 225 IPR006501 GO:0004857
Seca3g09569 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Seca3g09569 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 225 IPR035513 -
Seca3g09569 574 SMART PMEI_2 68 221 IPR006501 GO:0004857
Seca3g09569 574 SUPERFAMILY Pectin lyase-like 266 570 IPR011050 -
Seca3g09569 574 PANTHER PECTINESTERASE 41 564 - -
Seca3g09569 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 227 IPR035513 -
Seca3g09569 574 FunFam Pectinesterase 262 574 - -
Seca3g09569 574 Pfam Pectinesterase 268 560 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09569 Seca-Chr3 236843691 236847029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09569 7 574 Carbohydrate Esterase AT3G10710 58.115 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09569 - - ccaj:109817308 929.087