Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09559 ATGGCTGAAAGCATTCTGTTCAACATCATGGAGACATTGATCGAAAAGCTGAGTTCTATGGTTGTTGAAAGCTGGAACATGAGAGATGATCTTGAGAAGCTGGTGGACAACATGGCAGAGATCAAGGCTGTGATTTTGGATGCAGAGGAGCAGCAGGGTACCAACCATCAAGTTCAACTCTGGCTGGAGAAGCTGAAAGATACTCTTTATGATGCTGAGGACTTGCTTGATGACTTCTCCACTGAAGACAAGAGGCGACGAGTGATGACCAAAGACAAGCAGTTTAAAATGGTTCGCATCTTCTTCTCATCCTCCAACCAACTTGTCTTTTCTTTCAAAATGTCTCAAAAAATCAAGGAACTTAGGAAGAGAATTGAGGCTCTTAATGTTGATAATGATAAGGCAGTCCAACAACACTTCTTTGAGTTGAAAAAGTGGGTATGTGTGTCTGATGACTTTGATGTGAAAGCCATTGCTGGAGAGATCATTGGGTCTAGAAGTGATGATGTGATGGAGCAAGTGCAACAGGAACTCCGCAAAAGAGTTGAGGGAAAAAGATATTTACTAGTTTTGGATGACATATGGAATGAAAATCGTGCGCATTGGCTTAAATTGATGACACTGCTGGTGGATGGAGCAAAAGGAAGTAAAATAATCATAACCACAAGAAGTGAGAAGGTGGCCAAAATAAGTGGCACTTCTTCATTCTTCTTTTTAAAGGGTCTAGATGAGGAACAATCTTGGAAGTTGTTCAGTCAATTGGCTTTCGAGAATGGAAAAGAGCCCGAGAATCAAAATTTGGTGTCGATTGGCAAGGAAATTGTGAGGAAATGTTCAGGGGTTCCTCTCGCAATTAGAAGTATTGGAAGCTTAATGTATTCCATGGAGACAGAAAATGATTGGTTGAGCTTCAAGGATAAAGACCTTGCGAAAATCGATGAACAAGGTGAAAATGTTGTACTTCAACTTCTCAAAGTAAGTTATGATCATCTGCCCTTCCACTTGAAAAAGTGCTTTTCATTTTGTTCCTTGTTTCCAAAAGATTATCACATTTGGAGGAGAAACTTAATTCAACTTTGGGTGGCACAAGGGTTTATTCAGTCATCAGATGACAACATGTGTTTAGAAGAAGTTGGTAATGGATACTTCATGAATTTAGCTCATAGATGTTTCTTTCAAGATTTTCAAAGAAATCTTGATGATGAAGTTAATACTTTCAAAATGCACGATCTTGTGCATGACTTGGCAAAGTTCGTTTCAGGAAATGATTGTGCCATAGTCAATGAAAAAGAGCAACATATTGACAAACAAACCCGTCATCTTTCTTTTAGCTTTTCATTGGATTCTTTTTGGCAAGTTCTAGTTCCCTTTTCAAGGCATACAAACTAA 1389 0.3888 MAESILFNIMETLIEKLSSMVVESWNMRDDLEKLVDNMAEIKAVILDAEEQQGTNHQVQLWLEKLKDTLYDAEDLLDDFSTEDKRRRVMTKDKQFKMVRIFFSSSNQLVFSFKMSQKIKELRKRIEALNVDNDKAVQQHFFELKKWVCVSDDFDVKAIAGEIIGSRSDDVMEQVQQELRKRVEGKRYLLVLDDIWNENRAHWLKLMTLLVDGAKGSKIIITTRSEKVAKISGTSSFFFLKGLDEEQSWKLFSQLAFENGKEPENQNLVSIGKEIVRKCSGVPLAIRSIGSLMYSMETENDWLSFKDKDLAKIDEQGENVVLQLLKVSYDHLPFHLKKCFSFCSLFPKDYHIWRRNLIQLWVAQGFIQSSDDNMCLEEVGNGYFMNLAHRCFFQDFQRNLDDEVNTFKMHDLVHDLAKFVSGNDCAIVNEKEQHIDKQTRHLSFSFSLDSFWQVLVPFSRHTN. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09559 462 FunFam Probable disease resistance protein At1g63360 328 418 - -
Seca3g09559 462 Gene3D - 334 417 IPR036388 -
Seca3g09559 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 342 IPR027417 -
Seca3g09559 462 Gene3D - 125 235 IPR027417 -
Seca3g09559 462 Gene3D - 9 119 - -
Seca3g09559 462 Gene3D - 241 332 IPR042197 -
Seca3g09559 462 Pfam Rx N-terminal domain 10 94 IPR041118 -
Seca3g09559 462 PRINTS Disease resistance protein signature 181 195 - -
Seca3g09559 462 PRINTS Disease resistance protein signature 278 292 - -
Seca3g09559 462 PANTHER DISEASE RESISTANCE PROTEIN RP 121 447 IPR044974 GO:0006952
Seca3g09559 462 Coils Coil 31 51 - -
Seca3g09559 462 Coils Coil 118 138 - -
Seca3g09559 462 Coils Coil 62 82 - -
Seca3g09559 462 Pfam NB-ARC domain 129 329 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09559 Seca-Chr3 236725257 236729742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09559 178 439 WRKY Transcription Factor Family AT5G45050 23.616 4.14e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09559 - - mtr:11419276 427.557