Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09556 ATGGTAGTAACTGATAAAATGGGGATCCAAACTATGGGATCTCAAGGTGGTGGAGATAGTAATGGAAAACGGTCACAGTGCCAGCCTTTGGTGCGGCAAAACTCAATGTACAGTCTCACACTTGATGAGGTTCAGAGTCAATTAGGTGATTTAGGGAAGCCGCTAAGTAGTATGAATCTCGATGAGCTTTTAAAAAATGTATGGACTGTTGAGACAAGCCAGTCCATGGTTATGGACAATGAGGGCACAGCACAGGCTAGTCAAGCTGCTCTGCAGCGTCAGGCTAGTCTGTCATTAACTGGTGCACTAAGCAAGAAGACTGTAGATGAGGTTTGGAGAGATATCCAACAAAACAAAGACAGTGAGGAGAAGAAGTCACGAGACAGACAGCCTACTTTAGGAGAGATGACATTGGAGGATTTCTTGGTCAAAGCAGGTATTGTTGCCGAAGCATCTTCTAATAAAAAGTATACTGGTACTATAGCTGGGATTGATTCAAGTGTAGCAGTACCACAGTTTCCTCCCCAAGGTCAGTGGATACAGTATGCACAACCACAATATCAGCATCCACAACAAAGTTTAATGGGGATTTATATGCCTAGCCAAGGTATAGCACAGCCATTACACATGGGGGCTGGTGCTTCATTGGATGTTCCATTTGCCGATAGTCAGGTGGCATTGTCTTCACCTCTAATGGGAACAGTGTCAGATACGCAGACACCTGGAAGAAAAAGGAGCACTCCAGAGGACATGATGGAGAAGACTGTTGAGAGGAGGCAGAAAAGGATGATAAAAAATCGAGAATCTGCTGCTCGTTCAAGAGCAAGGAAACAGGCATACACAAACGAATTGGAGCAAAAAGTATCACGTTTGGAAGAGGAAAATGAAAGGCTGAGGAAACGAAAGGAGCTAGAGAAGATGTTGCCATGTGCACCACCTCCTGAACCTAGATATCAACTTCGCCGAATAGCATCAGCTCCATTCTGA 987 0.4458 MVVTDKMGIQTMGSQGGGDSNGKRSQCQPLVRQNSMYSLTLDEVQSQLGDLGKPLSSMNLDELLKNVWTVETSQSMVMDNEGTAQASQAALQRQASLSLTGALSKKTVDEVWRDIQQNKDSEEKKSRDRQPTLGEMTLEDFLVKAGIVAEASSNKKYTGTIAGIDSSVAVPQFPPQGQWIQYAQPQYQHPQQSLMGIYMPSQGIAQPLHMGAGASLDVPFADSQVALSSPLMGTVSDTQTPGRKRSTPEDMMEKTVERRQKRMIKNRESAARSRARKQAYTNELEQKVSRLEEENERLRKRKELEKMLPCAPPPEPRYQLRRIASAPF. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09556 328 MobiDBLite consensus disorder prediction 232 328 - -
Seca3g09556 328 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 256 301 IPR004827 GO:0003700|GO:0006355
Seca3g09556 328 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 261 276 IPR004827 GO:0003700|GO:0006355
Seca3g09556 328 MobiDBLite consensus disorder prediction 8 26 - -
Seca3g09556 328 Coils Coil 274 308 - -
Seca3g09556 328 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 256 308 - -
Seca3g09556 328 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g09556 328 SUPERFAMILY Leucine zipper domain 258 303 IPR046347 GO:0003700|GO:0006355
Seca3g09556 328 Pfam bZIP transcription factor 258 304 IPR004827 GO:0003700|GO:0006355
Seca3g09556 328 MobiDBLite consensus disorder prediction 243 308 - -
Seca3g09556 328 Gene3D - 256 309 - -
Seca3g09556 328 SMART brlzneu 254 322 IPR004827 GO:0003700|GO:0006355
Seca3g09556 328 CDD bZIP_plant_BZIP46 258 312 - -
Seca3g09556 328 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 31 327 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09556 Seca-Chr3 236652505 236657842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09556 23 328 bZIP Transcription Factor Family AT3G56850 55.449 2.44e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g09556 bZIP_1 7.4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09556 K14432 - gmx:100101875 494.967