Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09555 ATGCAGAAACTCTTACAGGCTGATGTCAATCTCAACCATTTCAACACGCGTTTTGAAGGCTTATCATTGAACATATTATTATTACTACTTACCTCTTCTCTTCCCTCACACTTTCTATACTCCCTCACATACCCTGACTCTTCAAGATACCATTTCAATTCAAAGACTTGTTTTTTTTGTTTTGTTTTGTGCACCACCATGGGATATGAAACCAGAAGGCTCTCAGATGAGTATGAGGTTTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTCAGAAAAGGTACCAAAAAATCAAGCAGTGAGAAAACCTCAGTAGCCATCAAAACACTGAGAAGGTTAGGTGCTTCTAATAACAACCCTTCTGGTTTACCAAAAACAAAAGGTGGAGAGAAGAGCATAGCAACTATGATGGGGTTCCCCACATGGAGACAGGTTTCAGTCTCAGATGCCTTGTTGACCAATGAGATTCTTGTCATGAGGAGGATAGTCGAAAATGTTTCACCTCACCCCAATGTGATTGATCTCTATGATGTGTATGAGGACTCAAATGGGGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGGGAATTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGCTGTGGTTCGCCAGATAGCAGCAGGATTAGAGGCTATTCATAGAGCTAACATTGTTCATAGGGACTTGAAGCCTGAGAATTGCCTTTTTTTGGATACCAGGAAGGACTCTCCTCTCAAGATCATGGACTTTGGGTTGAGTTCTGTTGAAGAATTTACTGACCCTGTTGTTGGTTTGTTTGGATCAATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACTAAGAGTGACATGTGGTCTCTAGGAGTAATTTTATATATCTTACTCTCTGGGGTATCCACCTTTCATTGCTCCGTCTAA 954 0.4109 MQKLLQADVNLNHFNTRFEGLSLNILLLLLTSSLPSHFLYSLTYPDSSRYHFNSKTCFFCFVLCTTMGYETRRLSDEYEVSDVLGRGGFSVVRKGTKKSSSEKTSVAIKTLRRLGASNNNPSGLPKTKGGEKSIATMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAAVVRQIAAGLEAIHRANIVHRDLKPENCLFLDTRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGVSTFHCSV. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09555 317 Gene3D Phosphorylase Kinase; domain 1 73 118 - -
Seca3g09555 317 Pfam Protein kinase domain 154 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09555 317 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 313 - -
Seca3g09555 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Seca3g09555 317 Gene3D Transferase(Phosphotransferase) domain 1 198 316 - -
Seca3g09555 317 SUPERFAMILY Protein kinase-like (PK-like) 69 314 IPR011009 -
Seca3g09555 317 SMART serkin_6 78 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09555 317 Gene3D Phosphorylase Kinase; domain 1 144 197 - -
Seca3g09555 317 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 69 194 - -
Seca3g09555 317 ProSitePatterns Protein kinases ATP-binding region signature. 84 109 IPR017441 GO:0005524
Seca3g09555 317 ProSiteProfiles Protein kinase domain profile. 78 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09555 Seca-Chr3 236627925 236632848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09555 65 313 EF-hand Containing Proteins AT1G35670 36.546 1.67e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Seca3g09555 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09555 K13412 - gmx:732616 426.787