Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09553 ATGGATGGTGAAACAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTAAAAATGTTGAAACTGAAAATGGCCAAGTGCAAATTATGACTGTAAACTTGGCTGAAAGAGAAGTAAATAATCAGGATGGTGATGTGTATAGGAAACCACAGGTGGGCATCCAATTTGAATCTGAAGATGCTGCAAGATCATTTTATGATACATATGCAAGACATATCGGATTTAGCATCCATGTTGGTCAATTCAGTCGTTCTAAGCCTGATGGTCCAATCATAACTTGGGACTTTTCTTGTTCCAGGGAGGTATTGAAAAGGAAGAATGTAATAAGTTGCAATGCAATGCTTAGGATAGAGAGAAAAGATGCAAACTGGATAGTGACAAAATTTGTTGAGGACCATAATCATTCCCTGGCTTCCTCTAAAAAGGTGCAGTACCTTCGACCCCATAGGCATTTTGCAGGTGCTACAAGAAATGTGACAGAGGCATTTGATGCCAGTAATGATTCCTATGTTTCTATGAATGGAAATCATTTAGAACCAATTAGTACAATTAGGAGTTCCTCTCCAGCTGACATAAGTCATCCAACGAGAAACATTGGGTCCTTTGCCTATGTAAGATCATCCCGAAAGAGGACCCTTGGAAGAGATACTCAAAATATTCTGAATTATTTTAAGAAGATGCAGGGAGAAAACCCTGGCTTCTATTATGCAATACAGCTTGATGATGAAAACCGCATGACCAACGTATTCTGGGCTGACGCAAGGTCAAGAACAGCTTATAATTACTTTGGTGATGCAGTAATTTTTGACACAATGTATAGACCAAACCAATACCAAGTCCCATTTGCTCCATTTACAGGAGTCAATCATCATGGTCAGATGGTTTTATTTGGTTGTGCATTACTTCTAGATGAATCTGAATCTTCCTTTACTTGGCTGTTCAGGACATGGCTATCTGCTATGAATGATCGACCACCTGTTTCTATAACCACAGACCAAGATAGAGCCATACAAGCAGCTGTTGCCCAGGTGTTTCCAGAAACTCGCCACTGTATTTGTAAGTGGCACATTTTGAGAGAAGGTCAGGAAAGATTGGCTCACATTTACCTTGCTCATCCTTCATTGTATGGGGAGTTGTATAGCTGCATAAATTTCTCTGAGACTGTTGAGGATTTTGAATCAACATGGAAGTCTCTTCTAGATAAATATGATCTCCAGAAAAATGATTGGCTTCTAGCAGTGTATAATGCTCGCAAACAATGGGCACCTGTTTACTTTCGTGATACTTTCTTTGCTGCATTTACCTCAAACCATGGGGTTAGCTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAAGCAGTATGAACGATCTATTGAACATTCATTGGAAAAGGAAATAGAAGCAGATTACGAGACCATTTGTACCACACCTATATTGAAGACTCCATCACCAATGGAACAACAAGCTGCAAATCTGTACACTAAAAAGATTTTTGCGAAGTTTCAGGAGGAGCTGGTGGAAACTTTTGTGTATACTGCGAATAATATTGAGGATGATGGGGTGGTCAGTAAATACAGGGTTGCAAAATATGAACATGATTACAAGGCATACATGGTCACATTAAATATCTCTGAATTGAAGGCGAATTGCAGCTGTCAGATGTTTGAATACTCAGGCATTCTTTGTCGACATATATTGACTGTCTTCACTGTTACAAATGTTCTTACCCTTCCATCACACTATATTTTGAAGCGATGGACAAGGAATGCGAAATCCAGTATCGGAACTGATGAAAAAATACCAGATTCACTTGACATTGAAAATCTCACTTTACGTTTTAATAGTTTATGTCGAGAAGCCATTAAGCTTGCAGAAGAAGGGGCAATATCTATAGAGACTTATAATGCGGCAATGAATGTCTTTAGAGAGGGTGCTAAAAGGGTTGGTGTTGTGAAGAAAAATGTAGCAAAAGTCAGACCTCCAAGCACTCAGGGTAATGGAAGCAGTCAGGAAGACAATAGCAAGAAGAGCCCTTCATCAATTTCTGAAGCCATGCCGTCATTGTGGCCTTGGCAAGATTCAGTGACACATCACTTTAATCTTAATGACATTGGGCTTCCTGTTACTGATCTGAATCATCCTAGTATGGCTCCTGTTTCTATTCATCGGGATGGTGGTCCACCAGATAACACTGCTGTCCTTACTTGTTTCAAGTCTATGACTTGGGTAATAGAAAATAATAATTCAAGTCCATCCAGTAAAGTTGCAGTGATCAACATGAAGCTGCAAGATTATGGCAAGATCCCTTCAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGATCACTTTGGAGCCTATGTTGAGGTCTATGGCTAACATCAGCCAGCAGCTCACTACACCAGTCAATAGAGTTGCTGTCATCAGTCTGAAAGTATATAAACTTGGATTCATGATCCTCTACTCTTTCTAG 2493 0.3971 MDGETVDEGENSDRPASKNVETENGQVQIMTVNLAEREVNNQDGDVYRKPQVGIQFESEDAARSFYDTYARHIGFSIHVGQFSRSKPDGPIITWDFSCSREVLKRKNVISCNAMLRIERKDANWIVTKFVEDHNHSLASSKKVQYLRPHRHFAGATRNVTEAFDASNDSYVSMNGNHLEPISTIRSSSPADISHPTRNIGSFAYVRSSRKRTLGRDTQNILNYFKKMQGENPGFYYAIQLDDENRMTNVFWADARSRTAYNYFGDAVIFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESESSFTWLFRTWLSAMNDRPPVSITTDQDRAIQAAVAQVFPETRHCICKWHILREGQERLAHIYLAHPSLYGELYSCINFSETVEDFESTWKSLLDKYDLQKNDWLLAVYNARKQWAPVYFRDTFFAAFTSNHGVSSFFDGYVNQQTTIPLFFKQYERSIEHSLEKEIEADYETICTTPILKTPSPMEQQAANLYTKKIFAKFQEELVETFVYTANNIEDDGVVSKYRVAKYEHDYKAYMVTLNISELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGTDEKIPDSLDIENLTLRFNSLCREAIKLAEEGAISIETYNAAMNVFREGAKRVGVVKKNVAKVRPPSTQGNGSSQEDNSKKSPSSISEAMPSLWPWQDSVTHHFNLNDIGLPVTDLNHPSMAPVSIHRDGGPPDNTAVLTCFKSMTWVIENNNSSPSSKVAVINMKLQDYGKIPSGETEVQFRVTRITLEPMLRSMANISQQLTTPVNRVAVISLKVYKLGFMILYSF. 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09553 830 Pfam SWIM zinc finger 546 578 IPR007527 GO:0008270
Seca3g09553 830 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Seca3g09553 830 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 655 IPR031052 GO:0006355
Seca3g09553 830 SMART 26again6 555 582 IPR006564 GO:0008270
Seca3g09553 830 Pfam MULE transposase domain 267 359 IPR018289 -
Seca3g09553 830 MobiDBLite consensus disorder prediction 660 690 - -
Seca3g09553 830 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Seca3g09553 830 MobiDBLite consensus disorder prediction 666 690 - -
Seca3g09553 830 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09553 Seca-Chr3 236606763 236616269 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g09553 MULE 1.1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09553 - - ccaj:109794121 1485.32