Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09551 ATGAAGAGGTCTCCACCATCTTCTTGTTCATCATCATCCTCTTCTGTTGGGTTTGAAACTCCCATTATTCAATCAGAGAAAAGAAAGGCTAAACATCCGAGAAGGAATCCCAAGTCCTCACAGAAATGTAAGCAGAACCAAACCACTGGAAGCAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGCATAGGTGGACAGGAAGGTTTGAAGCTCACCTATGGGATAAGAGTTCCTGGAACAACATTCAGAGCAAGAAGGGACGACAAGGTAATTTTAGGGCATATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTCAAGTACTGGGGGAAGGATGCAACCTTGAATTTCCCTATAGAAACATATTCAAAGGACCTTGAGGAAATGGACAAGGTGTCAAAAGAAGAATACTTGGCTTCTTTGCGGCGTCAAAGTAGTGGTTTTTCTAGGGGCATTTCAAAGTACCGTGGTGTGGCCAGGCATCACCATAATGGCCGTTGGGAAGCTCGGATAGGAAGAGTGTGTGGAAACAAGTACCTTTACTTGGGGACATATAAAACTCAGGAGGAGGCAGCTGTGGCATATGACATGGCAGCAATAGAGTACAGAGGACTCAATGCAGTGACCAATTTTGACATAAGCAATTATATTGACAAAATAAAGAAAAATGGCCAATCCCAACAAACAGAAGCACAGGTAGAAATAGCTCCTAACTCCTCTGACTCTGAAGAAGCGGAAGTTGAAGTAGAACAGACTGCTACACCCCCACCTGAGAATCTGCACATACAACCACAGGAGCACCAATTTCAACACACTCATGTTCCTCCAAGCGAGGAATCCTCACTAGTTACTGTTATGGACCATGTTCTTGAGCAGGACTTACCCTGGAGCTTCATGTACACAGGGCTATCACAGTTTGAAGACCCTGAATTGGCTTTGAGCAAACCTGAGGATTTAATGAGCATGTTTGATAGTGCTGGCTTTGATGAAGACATTAATTTTTTGCTCAGCACTGAACCTGGTGAGAGTGATATTAATATCAGTGCAGTTTTGGATAGTATTGACTCTGGAGACACAAATGGGGCTGCTGGAACCATGGTGGTTGATAACCAGCAGAAGCAGCTATTATCCTTATCTTCTTCACCATCATCAACAACAACTACAATTTCTTCTAACTATTCTCTATGA 1200 0.4333 MKRSPPSSCSSSSSSVGFETPIIQSEKRKAKHPRRNPKSSQKCKQNQTTGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQGNFRAYDTEEAAARTYDLAALKYWGKDATLNFPIETYSKDLEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGLNAVTNFDISNYIDKIKKNGQSQQTEAQVEIAPNSSDSEEAEVEVEQTATPPPENLHIQPQEHQFQHTHVPPSEESSLVTVMDHVLEQDLPWSFMYTGLSQFEDPELALSKPEDLMSMFDSAGFDEDINFLLSTEPGESDINISAVLDSIDSGDTNGAAGTMVVDNQQKQLLSLSSSPSSTTTTISSNYSL. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09551 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 277 - -
Seca3g09551 399 FunFam AP2-like ethylene-responsive transcription factor 157 218 - -
Seca3g09551 399 FunFam AP2-like ethylene-responsive transcription factor 55 124 - -
Seca3g09551 399 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 Gene3D AP2/ERF domain 56 124 IPR036955 GO:0003700|GO:0006355
Seca3g09551 399 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700|GO:0006355
Seca3g09551 399 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 CDD AP2 157 218 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 MobiDBLite consensus disorder prediction 380 399 - -
Seca3g09551 399 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
Seca3g09551 399 MobiDBLite consensus disorder prediction 239 264 - -
Seca3g09551 399 MobiDBLite consensus disorder prediction 1 56 - -
Seca3g09551 399 SUPERFAMILY DNA-binding domain 55 124 IPR016177 GO:0003677
Seca3g09551 399 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g09551 399 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 Pfam AP2 domain 56 114 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 SMART rav1_2 56 128 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 CDD AP2 55 123 IPR001471 GO:0003700|GO:0006355
Seca3g09551 399 MobiDBLite consensus disorder prediction 40 56 - -
Seca3g09551 399 ProSiteProfiles AP2/ERF domain profile. 56 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09551 Seca-Chr3 236596821 236601592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09551 23 279 AP2-EREBP Transcription Factor Family AT5G57390 50.000 1.62e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca3g09551 AP2 1.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09551 - - gmx:100527432 577.015