Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09531 ATGTTGGAACTGCCATTCAAAATGACACTTCGCTTCCCCATCTTGGATTTCAAGTCCTTACCCTTTGTTAACAACTTGGAGTCTGAGCTACTTGGTGGTGCTGTTGCTCTTCTTGCCGTGGGCCTCACGGCTTACATTTACTCTCGCATGAAAAAACCCAAAGGTTGCTTGGACCCCAAAAATTTCAAAGAATTTAAACTTGTGAAGAAGACCCAGCTAAGCCCCAGCGCTGCAAGATTCAGATTTGCCCTTCCTACCCCTTCTTCTGTATTGGGCCTTCCTGTTGGAAAAAACATACTTGCCAGCAGGGGAAAAGATAGCCAAGGAGAGGAAGTTATGAGATCATATACTCCAATCACGTTGGATTCAGATCTTGGCTACTTTGATTTGGTTGTGAAGATGTACCCAAATGGAAAGATGTCCCACCATTTTAGGCAAATGAAGGAAGGTGACAACTTGGCCGTGAAGGGCCCCAAGGGACGTTTCAGTTACAAAGCTGGCCAAGTTAGGGCATTTGGAATGCTTGCTGGTGGTTCAGGTATTACCCCAATGTTTCAGCTCATAAGAGCCATACTAGAAAATCCTAAGGACAAAACGAAGTTGTACCTTATTTACGCCAATGTTACAGAGGACGACATTCTGTTGAAGGAAGAACTAGACACCTTTGCAAACAAATATCCTCACAGTTTCCAAGTCTATTATGTTCTTAATAAGCCTCCTAATCAATGGAATGGTGGCGTTGGGTTCATATCAAAGGAGATGATTCAATCCCACTGTCCAGCACCAGCCCCAGATATCCAGATACTTAGGTGCGGTCCACCACCCATGAATAAAGCCATGGCTACTCACCTTGAAGCACTTGGGTACACATCAAACATGCAGTTCGAGTTCTAA 894 0.4441 MLELPFKMTLRFPILDFKSLPFVNNLESELLGGAVALLAVGLTAYIYSRMKKPKGCLDPKNFKEFKLVKKTQLSPSAARFRFALPTPSSVLGLPVGKNILASRGKDSQGEEVMRSYTPITLDSDLGYFDLVVKMYPNGKMSHHFRQMKEGDNLAVKGPKGRFSYKAGQVRAFGMLAGGSGITPMFQLIRAILENPKDKTKLYLIYANVTEDDILLKEELDTFANKYPHSFQVYYVLNKPPNQWNGGVGFISKEMIQSHCPAPAPDIQILRCGPPPMNKAMATHLEALGYTSNMQFEF. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09531 297 FunFam NADH-cytochrome b5 reductase 155 297 - -
Seca3g09531 297 SUPERFAMILY Riboflavin synthase domain-like 53 165 IPR017938 -
Seca3g09531 297 FunFam NADH-cytochrome b5 reductase 55 155 - -
Seca3g09531 297 Pfam Oxidoreductase FAD-binding domain 65 164 IPR008333 -
Seca3g09531 297 CDD cyt_b5_reduct_like 65 297 - -
Seca3g09531 297 Pfam Oxidoreductase NAD-binding domain 174 280 IPR001433 GO:0016491
Seca3g09531 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 173 192 IPR001709 GO:0016491
Seca3g09531 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 267 275 IPR001709 GO:0016491
Seca3g09531 297 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 211 222 IPR001709 GO:0016491
Seca3g09531 297 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 153 292 IPR039261 -
Seca3g09531 297 PRINTS Cytochrome B5 reductase signature 114 121 - -
Seca3g09531 297 PRINTS Cytochrome B5 reductase signature 150 164 - -
Seca3g09531 297 PRINTS Cytochrome B5 reductase signature 91 102 - -
Seca3g09531 297 PRINTS Cytochrome B5 reductase signature 211 222 - -
Seca3g09531 297 PRINTS Cytochrome B5 reductase signature 173 192 - -
Seca3g09531 297 PRINTS Cytochrome B5 reductase signature 267 275 - -
Seca3g09531 297 Gene3D Translation factors 55 156 - -
Seca3g09531 297 PANTHER NADH-CYTOCHROME B5 REDUCTASE 52 297 IPR001834 GO:0016491
Seca3g09531 297 Gene3D - 157 294 IPR039261 -
Seca3g09531 297 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 60 165 IPR017927 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09531 Seca-Chr3 236161679 236168779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09531 45 297 NADPH P450 reductases AT5G17770 70.356 1.15e-136 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09531 K00326 - gmx:100809584 497.664