Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09529 ATGGACACGAAAAACCCATCTGAGAATTCTTCCAATTTTGAATCTTTCATGCATAATCCATCGTCACGTAGAAGTGCCATGTCCATTCAGTCTAAGAGTTCTGGCAGGAATTCAACCCGGGAAGTGACTTTTGACCATTCAGGATCCAAGCCTGTGAGGTATGGGTCAAAGGGTGCTGATTCTGAAGGTTTCAGCATGTCCCAGAAGGAAATCAGTGATGAGGATGCTAGGTTGGTTTATGTTGATGATCCTCAGAGGACAAACGAGAGGTTTGAATTTGCTGGTAATTCGATTCGTACTGGGAAGTACTCCATCCTCACCTTTCTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTACATTTATTTCCTTATAATTGCCATTCTTAATCAGCTCCCTCAGCTAGCTGTTTTTGGAAGGGGTGTTTCTATTTTGCCATTAGCCTTTGTTCTTCTTGTTACTGCTGTGAAGGATGCATATGAGGACTGGAGAAGGCACAGATCAGACAAAGTTGAGAACAACAGGTTAGCATTTGTTTTGGTTAATGGCGAGTTCCAAGAAAAGAGATGGAAAGATATTAAAGTTGGTGAGATCATTAAAATCAGTGCAAATGAAGCCATTCCTTGTGACTTTGTGTTGCTCTCAACTAGTGACCCTACTGGGGTTGCTTATGTGCAGACTCTTAATCTAGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAATCTAAGTTTCATGAAAAGGAGAGGTTCGATGGATTGATTAAGTGTGAGAAACCCAATAGAAATATATATGGGTTTCAGGGTAACATGGAAATTGATGGAAAGAGGTTGTCTCTTGGGTCCTCCAATATTGTCCTTAGAGGTTGTGAACTCAAGAATACTCATTGGGCACTTGGTGTTGCTGTGTATTGTGGTCGTGAGACCAAAGCTATGCTCAACAGCTCAGGAGCTCCATCTAAGAGGAGCCGTCTTGAGACTCGGATGAACTCTGAGATCATCATGCTTTCTTTCTTTCTTGTAGCTTTGTGTACAGTTACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGAGTGAGTTGAATCTCTTGCCTTACTATAGGAAACTGGATGTTTCAGAGGGGAAAGAGGAAAGCTATGAATATTATGGATGGGGAATGGAAATCCTTTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATCCCCATATCCTTGTACATATCTATGGAGCTTGTCCGTGTCGGTCAGGCCTACTTCATGATCAAAGACTCCAGAATGTATGATGAGACAACAAATTCAAAATTCCAGTGCAGGGCCTTGAATATTAATGAAGATTTAGGGCAAATTAAATATGTATTTTCTGACAAAACTGGTACACTGACTGAGAACAAGATGGAGTTTCAATGCGCGAGCATTTGGGGGTTTGATTACAGTTCTTCAAAAAGCGGTATTGACAATGAGCAAGCTGAATACTCTGTTCAAGTGGATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCGAGAGCTTTTGCAATTAGCAAAAAGTGGATTTTCAAATATAGAGGGAAAACGAATTTATGATTTCTTTCTAGCACTGGCAGCATGCAATACTATTGTGCCTCTTATTATTGACACATCTGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGGCATATGCTGCCGCTGCATATGGTTTTATGCTTATAGAGCGAACCTCGGGTTACATTGTCATTGATATTCATGGAGAAAGACACAGGTTCAATGTCTTGGGTTTGCATGAATTCGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAATGACAACTCTGTGAAACTTTTTGTCAAAGGGGCAGATACATCCATGCTTAGTGTGATAGATAAATCATTGAACACAGACATAATAAAAGCAACTGAAGCCCATCTCCACTCTTATTCTTCCCTGGGTTTGAGGACACTTGTTATTGGGATGCGGGACTTGAATGCTTCAGAATTTGAGCAATGGCATTTTACCTTTGAGGCAGCAAGTACTGCTTTGATTGGTAGGGCTGCTATGCTTCGCAAGGTTGCTATCAATATAGAGAACAATCTCTGCATATTGGGTGCAACTGCTATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATCGAGTCTCTAAGGAGTGCAGGTATTAAAGTATGGGTGTTGACTGGAGACAAACAGGAAACTGCCATATCAATTGGATACTCCTCAAAGCTCCTCACGAGCAACATGACTCAAATTATACTTAAGAGCAACAATAGAGAGTCATGTAGAAGACGGTTACAAGACGCCCTTGTCATGTCTGAAAAAAACATGGCTCAATCTGCAGTTACCAACTATCCTGAAGGAAGTTCTGATGTTACAACTACAATAGCCTTGATTATTGACGGTACCAGCCTTGTATACATTCTTGACAGTGAACTTGAAGATGAGCTCTTTCGACTTGCAAGTAGATGTTCTGTTGTTCTGTGTTGTCGAGTGGCTCCATTGCAAAAGGCTGGAATTGTTGCCCTAGTGAAGAAAAGGACAGCTGATATGACTCTAGCCATTGGTGATGGGGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGGCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGCCACTGGAATTACCAAAGACTGGGCTACATGATACTGTACAATTTTTACAGAAATGCTGTCCTTGTTCTTGTCCTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGTAGCATGTTGTATTCAATAGTCTACACTGCATTGCCAACTATTGTTGTCGGTATTCTTGACAAGGATCTTAGTAAAAGGACACTCCTAAAGTATCCTCAGCTTTACGGGGCTGGGCAGAGACATGAGGCCTACAACAAAAAGTTATTTTGGTTGACAATGGCTGATACTTTGTGGCAAAGCATTGTTGTCTTCTTTGCTCCTCTCTTTGCATATTGGGGAAGCTCTGTAGATGTAGCAAGCATAGGAGATCTTTGGACTCTTTCAGTAGTTATTATGGTTAATTTGCACTTGGCAATGGATGTCATCAGGTGGAATTGGATTATTCATGCAGCCACTTGGGGGTCTGTCATTGCAACTTTTATTTGTGTTATGGTTATTGATGCTATACCGGCATTTCCTGGTTACTGGGCCATCTTTCACACTGCAGGGACTGGACTGTTCTGGCTATGTTTGCTGGGAATTGTGATAGCAGCATTGCTTCCACGTTTTGTTGTAAAATTTGTTTATCAATATTATTTTCCCAATGATATTCAGATTTCAAGAGAAGCTGAGAAGTTTGGGAATGTAAGGGTCAATGAAGGTGGACAGATAGAAATGCATTCCATCTCAGATGGTCCACCAAGATGA 3549 0.4114 MDTKNPSENSSNFESFMHNPSSRRSAMSIQSKSSGRNSTREVTFDHSGSKPVRYGSKGADSEGFSMSQKEISDEDARLVYVDDPQRTNERFEFAGNSIRTGKYSILTFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLAFVLVNGEFQEKRWKDIKVGEIIKISANEAIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKFHEKERFDGLIKCEKPNRNIYGFQGNMEIDGKRLSLGSSNIVLRGCELKNTHWALGVAVYCGRETKAMLNSSGAPSKRSRLETRMNSEIIMLSFFLVALCTVTSVCAAVWLKRHKSELNLLPYYRKLDVSEGKEESYEYYGWGMEILFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIKDSRMYDETTNSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGFDYSSSKSGIDNEQAEYSVQVDGKVLKPKMKVKVNRELLQLAKSGFSNIEGKRIYDFFLALAACNTIVPLIIDTSDPTVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGYIVIDIHGERHRFNVLGLHEFDSDRKRMSVILGYNDNSVKLFVKGADTSMLSVIDKSLNTDIIKATEAHLHSYSSLGLRTLVIGMRDLNASEFEQWHFTFEAASTALIGRAAMLRKVAINIENNLCILGATAIEDKLQQGVPESIESLRSAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIILKSNNRESCRRRLQDALVMSEKNMAQSAVTNYPEGSSDVTTTIALIIDGTSLVYILDSELEDELFRLASRCSVVLCCRVAPLQKAGIVALVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLFTAFTLTTAINEWSSMLYSIVYTALPTIVVGILDKDLSKRTLLKYPQLYGAGQRHEAYNKKLFWLTMADTLWQSIVVFFAPLFAYWGSSVDVASIGDLWTLSVVIMVNLHLAMDVIRWNWIIHAATWGSVIATFICVMVIDAIPAFPGYWAIFHTAGTGLFWLCLLGIVIAALLPRFVVKFVYQYYFPNDIQISREAEKFGNVRVNEGGQIEMHSISDGPPR. 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09529 1182 NCBIfam phospholipid-translocating P-type ATPase 93 1156 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca3g09529 1182 Pfam Phospholipid-translocating P-type ATPase C-terminal 909 1149 IPR032630 -
Seca3g09529 1182 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 73 1159 - -
Seca3g09529 1182 Pfam Phospholipid-translocating ATPase N-terminal 79 144 IPR032631 -
Seca3g09529 1182 FunFam Phospholipid-transporting ATPase 719 921 - -
Seca3g09529 1182 Pfam E1-E2 ATPase 180 420 - -
Seca3g09529 1182 FunFam Phospholipid-transporting ATPase 567 700 - -
Seca3g09529 1182 Gene3D - 719 921 IPR023214 -
Seca3g09529 1182 SFLD C1.7: P-type atpase like 446 932 - -
Seca3g09529 1182 Pfam Cation transport ATPase (P-type) 571 647 - -
Seca3g09529 1182 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Seca3g09529 1182 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Seca3g09529 1182 ProSitePatterns E1-E2 ATPases phosphorylation site. 465 471 IPR018303 -
Seca3g09529 1182 FunFam Phospholipid-transporting ATPase 151 320 - -
Seca3g09529 1182 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 469 735 IPR023299 GO:0000166
Seca3g09529 1182 SUPERFAMILY Calcium ATPase, transmembrane domain M 92 1148 IPR023298 -
Seca3g09529 1182 Gene3D - 566 698 IPR023299 GO:0000166
Seca3g09529 1182 MobiDBLite consensus disorder prediction 1 70 - -
Seca3g09529 1182 SUPERFAMILY Calcium ATPase, transduction domain A 176 317 IPR008250 -
Seca3g09529 1182 CDD P-type_ATPase_APLT_Dnf-like 95 1041 - -
Seca3g09529 1182 NCBIfam HAD-IC family P-type ATPase 852 967 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09529 1182 MobiDBLite consensus disorder prediction 1 45 - -
Seca3g09529 1182 SUPERFAMILY HAD-like 450 922 IPR036412 -
Seca3g09529 1182 Gene3D - 150 320 - -
Seca3g09529 1182 SFLD p-type atpase 446 932 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09529 Seca-Chr3 236139706 236146117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09529 17 1182 Primary Pumps ATPases AT5G04930 69.744 0.0 1727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09529 K14802 - gmx:100784988 2014.19