Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09525 ATGGCAAAACCAGTTTCCCATTCATATCTGCTCCTTTTAATCTTGTTTCTTACCATCCATCTTTCAGAAGAGTTACAATTTTCTCAGTATCAGACACTTCTCAAAGTCCAGCAACTTCTTGGTTACCCTTCAGCACTAGGCAGCTACAGCAGCAACACAGATAACTGCAACATTGAACCTACCCCATCTTTGACACTAGTGTGCTATGAGGATAACTTGACACAGCTGCATGTTGTTGGTAACAAGGGGTTTACCTCATTGCCTCAGAACTTCTCCTCAGACACTCTATTTGCCACACTAGGCAGTCTATCAAGCTTGAAAGTCCTCTCTTTGGTTTCTCTAGGTCTCTGGGGGCCTCTACCTGAAAGCATTGCTCAATTGTCTTCACTGGAAATACTTAACATTAGCTCAAATTACTTCAATGGAGCCATCCCAGTCCAAGTTTCACATCTGAAGAACCTGCAGTCTGTGGTACTTGATGATAACAACTTCAATGGTGAAATTCCCAACTGGGTAGGCTCCCTTCAAGGTTTGGCTGTGCTTAGTATGAAGAATAATTGGTTTAGTGGGAACCTGCCAACTTCAGTGAATGCCCTTGTTACTCTTAGAGTATTAGATCTGTCAAATAATCAGCTATCTGGGGAACTACCTAATCTTCACAATTTGTCAAACCTTCAAGTTCTTCACTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTTTGCCCACCAAGTTAATTTCCCTTGTGCTTAGAAACAACAGCTTTAAGCTTAGTGTCCCTTCTAATGTAAGTTCTTTCTATCAGCTCCAAAAGCTGGACCTTTCATTTAATGGCTTTGTGGGGCCATTTCCTCCATCCTTATTGTCACTGCCTTCCCTCAATTACCTTGATATCTCTTCAAATAAGTTCACTGGGTTGCTTTTCAAGAATTTCTCATGCAATGATGATCTCCACTTTGTGAATTTATCTTCAAATCTTTTGAAAGGGGAACTTCCCACTTGTTTAAGACCAAAGACAAGGGTTGTTTTGTATACTAGAAACTGTTTATCAAATGAGAACCAAGATCAGCTCCCTTCCACCTTCTGCAGCAATGAGGCTCTGGCAGTGAATGTCACACCCCAACAACAGAAGCATAAGAGAACAACAGGTACAACAGTGCTTGTATCAAGTATGGGAGGTGTTGTTGGAGTACTGATTGTTGGTGTGGTTATCTTGGTTGTTAGCCAGGTTCATAAAAAACATGTTGTGAAAACACCTTCAAAGTCCACATTGGAGAACGTTATCAGTCAGGCACAGAATGAGGATGAAGTGAAAACTCCTAAAAGGTCCATAATGGAGCATATCATCAGCAGGGTTCCTGACAAACATGCTGTGAAAACCCTATCAAGATCCATAAAGGAGCAAGTCATGAGCCGAGTGAATAACAGACGTATTGTGAAGACTCATACAAGGTCCATAATAGAGCATGTATCATCAGTTAACACTGCAAAACTACTCACTGATGCAAGATATATATCTCAAACAATGAAGATGGGGGCTAGCCTTCCTGCTTATAGGACCTTTCCTTTGGACGAACTTAAGGAAGCTACAAATAATTTTGATGCATCATGTTTCATAAGTGAAGGTTCACATGGTCAGATATATAAAGGGGTGCTCTCTGATGGAATGCATATTGCTATTAGAGGCATGAAAATAAGAAAGAAACACAGCCCTCAGACCTATATGCACCATGTTGAGTTGATTTCAAAACTCAGGCATTCACACTTGGTTAGTGCTCTTGGGCATTCTTTTGAGTGCAACCAGGATGATTCAAGTGTCAACACTATCTATCTCATATCTGAGTTTGTTCAAAACAAAAGTTTAAGAAGCTGTGTCTCTGGATCTTCTGGAGAAAAGCTTTCTTGGACACAAAGAATAGCAGCTGCAATTGGAGTGGTGAAAGGCATTCAGTTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTGAAGATAACAGATATTCTTTTGGATAACAACCATAATGTTAAAATAAGCAGTTATAATCTGCCACTCTATGCTGAAAACAAAAGAACGGTCAGCAATGGAACTTCCCCTGGATTAAAAGGAAATCTCCAAGCAAGGATAAAGGATGCAGACAAGCATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGTACACTAAAAGATCTTTTACAGGTAAGTATCAAGACTGATGATATAGCTAGAAGGAGTATTGTTGACCCAGTAATTCATAAGGAATGCTCAGATGAATCATTGATGACAATGATGGAGATATGTGTAAGGTGTTTGTCTAGTGAACCAACTACTAGGCCTTCTGTGGAAGATGTTCTTTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATACATGGAAAAGAGACTCAAATGATAATAGAGACTCGCCTGCACCATCCTCCAGGGAGACATAA 2502 0.4013 MAKPVSHSYLLLLILFLTIHLSEELQFSQYQTLLKVQQLLGYPSALGSYSSNTDNCNIEPTPSLTLVCYEDNLTQLHVVGNKGFTSLPQNFSSDTLFATLGSLSSLKVLSLVSLGLWGPLPESIAQLSSLEILNISSNYFNGAIPVQVSHLKNLQSVVLDDNNFNGEIPNWVGSLQGLAVLSMKNNWFSGNLPTSVNALVTLRVLDLSNNQLSGELPNLHNLSNLQVLHLENNTFGPHFPSLPTKLISLVLRNNSFKLSVPSNVSSFYQLQKLDLSFNGFVGPFPPSLLSLPSLNYLDISSNKFTGLLFKNFSCNDDLHFVNLSSNLLKGELPTCLRPKTRVVLYTRNCLSNENQDQLPSTFCSNEALAVNVTPQQQKHKRTTGTTVLVSSMGGVVGVLIVGVVILVVSQVHKKHVVKTPSKSTLENVISQAQNEDEVKTPKRSIMEHIISRVPDKHAVKTLSRSIKEQVMSRVNNRRIVKTHTRSIIEHVSSVNTAKLLTDARYISQTMKMGASLPAYRTFPLDELKEATNNFDASCFISEGSHGQIYKGVLSDGMHIAIRGMKIRKKHSPQTYMHHVELISKLRHSHLVSALGHSFECNQDDSSVNTIYLISEFVQNKSLRSCVSGSSGEKLSWTQRIAAAIGVVKGIQFLHTGIVPGLYSNNLKITDILLDNNHNVKISSYNLPLYAENKRTVSNGTSPGLKGNLQARIKDADKHDVYDIGVILLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPVIHKECSDESLMTMMEICVRCLSSEPTTRPSVEDVLWNLQFAAQVQNTWKRDSNDNRDSPAPSSRET. 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09525 833 Pfam Leucine Rich repeats (2 copies) 201 233 IPR025875 -
Seca3g09525 833 PRINTS Leucine-rich repeat signature 202 215 - -
Seca3g09525 833 PRINTS Leucine-rich repeat signature 291 304 - -
Seca3g09525 833 FunFam Leucine-rich repeat receptor protein kinase EMS1 144 242 - -
Seca3g09525 833 Gene3D Phosphorylase Kinase; domain 1 493 607 - -
Seca3g09525 833 ProSiteProfiles Protein kinase domain profile. 534 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09525 833 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Seca3g09525 833 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 244 368 - -
Seca3g09525 833 Gene3D Ribonuclease Inhibitor 241 376 IPR032675 -
Seca3g09525 833 Gene3D Ribonuclease Inhibitor 150 240 IPR032675 -
Seca3g09525 833 SUPERFAMILY Protein kinase-like (PK-like) 513 807 IPR011009 -
Seca3g09525 833 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 508 616 - -
Seca3g09525 833 Gene3D Transferase(Phosphotransferase) domain 1 617 828 - -
Seca3g09525 833 SUPERFAMILY RNI-like 72 342 - -
Seca3g09525 833 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 153 806 - -
Seca3g09525 833 Pfam Protein kinase domain 541 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09525 833 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 617 821 - -
Seca3g09525 833 Gene3D Ribonuclease Inhibitor 28 149 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09525 Seca-Chr3 236102394 236107321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09525 42 830 Miscellaneous Gene Families AT3G03770 41.915 6.82e-175 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca3g09525 Pkinase 5.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09525 - - lja:Lj0g3v0004239.1 1315.44