Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09518 ATGGAGTCTCTTTTGAAGGATTTCGAACTAGAGTCGAAGAATCCATCTGAAGAGGCGCTGAGACGTTGGAGATCGAGCGCAGCGTTGGTGAAGAATCGCCGGAGAAGGTTCCGCTATGCCGCGGATCTCGAAAAACGTGCCGAACGGGAAGAAATCAAGGAAAAGATGCAGGAAAAGATTCGGATTGTTCTATATGTTCAGAAAGCAGCTTTGCAATATATTGAATCTGAGTCTGGTAAACTTGAATATGAGAATCATGCCACATCTGATCTTCCAGATGGTTTTGGCATTGATCCAGATTCAATTGCATCTCTTGTTCGGTGCTGTGATAACAACAGGTTGAAAGAAATTGATGGAGTTGAAGGGGTTGCGAGGAAACTCCATATCTCAGTGGTAGATGGTATTAGTGAAGACAGCATAAATACCCGGCAAAACTATTACGGGTTTAACCGCTATGCAGAAAAGCATTCTAAAACTTTTCTTATGTTCATGTGGGAATCACTGCAGGACTCAACACTCATTATTCTCATGGTTTCTTCCATAGTTTTAATAGGTGTAAGAGTTGCCACCGAAGGGTGGCTGGTGAGTTTGTATGATGAGGTGGGAATTATACTTGGTGTATTCTTGGTAATCATCTTTACCACTGTCAATGACTACCAGCAATCATTGAAGTTCAGGGAATGGGACAAAGAGAACAAAAACCTTTTTGTTCAGGTCACCAGAGATGGGAAAAGACAGAAGATATCAATTTATGACCTGGTGGTAGGAGACATTGTTCATTTGTCAATTGGGGGTCAAATTCCTGCTGACGGTATTTACATATCAGGATACAATTTACAGATCGATGAATCAAGTTTAACAGGTCAGATTGAAACAGTTCATGTAAATGAAGAAAAGCCTTTTCTCCTTGCAGGAACCAAAGTGCAAGGTGGGTCAGGGAAGATGATAGTGACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAGTGGAAGTTCTGAATGAGGGAGGAGAGGAGGAAACCCCGTTGCAGGTGAAATTGAATGGGGTTGCCACAATCGTTGGTAAGGTTGGCTTGAGTTTTGCTCTGATGACATTCGTGGTGTTGATGATAAGGTTTCTGGTGGAAAAAGCACTTAATGGTGAGTTTACTAATTGGTCATCAAAAGATGTGATCAAGCTGTTGAACTACTTTACTTTAGTTGTGACCATGATAGTCATTGCTGTTCCTGAAGGCTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAACAAAAAATTTAATGAGTGATAAGGTACTAGTGAGGCATCTTTCTGCATGTGAGGCAATGGGTTCAGCCAGTTATATTTGCTTAGATAAGACAGGGACATTGACCACTAACCACATGGTGGTTGATAAAATATGGATATCTGGAGAAGTTGTGAAGATGAAAGGTAAGAAGAGTGGAGACAAACTGAAAACAAAGATATCTGAAGGAGCTCTAAACATACTTCTGCAGGCTATATTTCAAAATAATGCTTCTGAAATGGTTCAGGATAAACATGGAAAGATCACAATACTGGGAACACCAACAGATTCAGCATTATTGAAACTTGGCTTGCTTTTGGAGGGTGATTTTGATGTCCAATGCAGATTGTATAAGAAACTAAAGGTTGAGCTTTTTAATCCTGTCCAGAAGAAGATGACTGTCCTTGTTAGTCTTCCTGATGGAGGAGTAAGAGCTTTCTGCAAGGGTGCTTCAGAAATAATATTAAAAATGTGTGACAAAATCATTGATTGCAATGGAATACCTGTTGATTTCTGTGAAGACTATGCAAACAATGTCTCTGATGTTATAAATGCTTTTGGCTCTAAGACTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGTAATCCCTGGTGAAGCTGACATCCCTGATAATGGCTATACACTGATAGCCGTTGTAGGAATCAGAGATCCTGTGCGCCCTGGGGTCAAAGATGTTGTTCAAAATTGTTTAGCAGCTGGGGTGACCGTTGCTATGGTCACTGGTGATGATATAAATATAGCTAGGGCTATTGCTACAGAATGTGGTATACTAAAAAATGGTGGTGTAGCAATAGAAGGACCAGAATTTCGTAACTTGTCTGCAAGGCAAATGAAGGATATGGTACCAAGAATTCAGGTAATGGCACGGGTCCTACCACTTGACAAACACTCCTTTGTAGCTAATCTAAAGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAATCAGTGATGCTCCTGCACTGCATGAGGCAGACATCGGAGTTGCCATGGGATTAGCAGGAACCGAGGTTTTCTTTTGTCTTTAA 2349 0.4091 MESLLKDFELESKNPSEEALRRWRSSAALVKNRRRRFRYAADLEKRAEREEIKEKMQEKIRIVLYVQKAALQYIESESGKLEYENHATSDLPDGFGIDPDSIASLVRCCDNNRLKEIDGVEGVARKLHISVVDGISEDSINTRQNYYGFNRYAEKHSKTFLMFMWESLQDSTLIILMVSSIVLIGVRVATEGWLVSLYDEVGIILGVFLVIIFTTVNDYQQSLKFREWDKENKNLFVQVTRDGKRQKISIYDLVVGDIVHLSIGGQIPADGIYISGYNLQIDESSLTGQIETVHVNEEKPFLLAGTKVQGGSGKMIVTTVGMRTEWGKLVEVLNEGGEEETPLQVKLNGVATIVGKVGLSFALMTFVVLMIRFLVEKALNGEFTNWSSKDVIKLLNYFTLVVTMIVIAVPEGLPLAVTLNLAFATKNLMSDKVLVRHLSACEAMGSASYICLDKTGTLTTNHMVVDKIWISGEVVKMKGKKSGDKLKTKISEGALNILLQAIFQNNASEMVQDKHGKITILGTPTDSALLKLGLLLEGDFDVQCRLYKKLKVELFNPVQKKMTVLVSLPDGGVRAFCKGASEIILKMCDKIIDCNGIPVDFCEDYANNVSDVINAFGSKTLRTLCLAVKDINVIPGEADIPDNGYTLIAVVGIRDPVRPGVKDVVQNCLAAGVTVAMVTGDDINIARAIATECGILKNGGVAIEGPEFRNLSARQMKDMVPRIQVMARVLPLDKHSFVANLKNMFGEVVAVTGDGISDAPALHEADIGVAMGLAGTEVFFCL. 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09518 782 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 445 IPR023298 -
Seca3g09518 782 NCBIfam HAD-IC family P-type ATPase 387 473 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09518 782 SFLD p-type atpase 433 778 IPR044492 -
Seca3g09518 782 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 48 IPR024750 GO:0005516
Seca3g09518 782 Gene3D - 448 778 IPR023214 -
Seca3g09518 782 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Seca3g09518 782 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Seca3g09518 782 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Seca3g09518 782 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Seca3g09518 782 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Seca3g09518 782 NCBIfam calcium-translocating P-type ATPase, PMCA-type 114 778 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca3g09518 782 Gene3D - 166 447 - -
Seca3g09518 782 FunFam Calcium-transporting ATPase 213 334 - -
Seca3g09518 782 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09518 782 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g09518 782 Pfam haloacid dehalogenase-like hydrolase 450 766 - -
Seca3g09518 782 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Seca3g09518 782 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Seca3g09518 782 Pfam Cation transporter/ATPase, N-terminus 119 182 IPR004014 -
Seca3g09518 782 SFLD Haloacid Dehalogenase 433 778 - -
Seca3g09518 782 Gene3D - 15 75 - -
Seca3g09518 782 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Seca3g09518 782 FunFam Calcium-transporting ATPase 461 656 - -
Seca3g09518 782 PANTHER CATION TRANSPORTING ATPASE 77 778 - -
Seca3g09518 782 SUPERFAMILY HAD-like 439 778 IPR036412 -
Seca3g09518 782 Gene3D - 461 656 IPR023299 GO:0000166
Seca3g09518 782 Gene3D - 134 334 - -
Seca3g09518 782 Pfam E1-E2 ATPase 237 429 - -
Seca3g09518 782 FunFam Calcium-transporting ATPase 15 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09518 Seca-Chr3 236000056 236005777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09518 56 778 Primary Pumps ATPases AT3G57330 60.912 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09518 K01537 - gmx:100798481 1014.6