Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09515 ATGCTAGTGCCTGTGAGTTTGTGCAAAACTGCTGCTAGGAAAGTTGTTGAAGAGCTTGCATCTCTACTCAATCAGAAGTATATCTCATACTCATCCTTCGAGGATGACTTTAACAAGCTTAAGAGCAACTTGAAAGCTATTTCAGCAGTTCTTCTTGATGCAGAAAAAAAGCAGGAGAAGAGCCACTTGATTCAGGATTGGTTGAGGGAGCTCCAACATGCTTTGCACGATGCAGAAGACTTGTTGGATGATATAAACGCAGAAGCTTTGCGGCAGAACGTGGAGGCTGAATGGCGCATGGTGAGTTGGGTAAGAAACTTCTACTTCCTTTCTGGAATGGGTTATAGAGTTAAGAAAATTCAAGGGAGAATAGATGACATAGCAAAACAGAGAAGGAGTCTTTGCTTGCAGGAGCTGAATCATGATGTGATTGTTCCCCAGAGGGAGCACAAACCCTCATATCTGCGCTTCACAGAGGTTGTTGGAAGAGAAGAAGACAAGAAAGAGGTCATAGAACGGTTATTTAGTGGTAGTAACAATGGTGAGAGTGTTTTGGTTGTTCCTATAGTGGGAATTGGGGGGTTGGGAAAGACTGCACTTATCCATTTGGTTTTTGGTGATGAAAGGGTCAAGAGGGGTTTTGATTTGAGGATTTGGGTAGATGTGTCTGATGATCTGAATCCAGAGAAGATAAGGCAGAAGAAAATTATCAGAGCTGTAGATGGTTTAGATAAGAGTGTCAGTGGCATGGATTTCTTGTCATGCCTGCAAGATAAAGTGAGAGAGAAGAGATTTTTACTTGTTCTAGATGATGTTTGGAATTGCAATAGGGTAGAATGGCTTGATTTGAAGAATTTGTTAGGAAATGGTGCAAGAGGAAGCAGGATTCTAGTGACAACACGGTACAAAAATACTGCATCCATCATTAGTGAGAATAATCTGTATCAGTTAGGTGCTTTGGCTCATGGTCACTGCATATCACTGTTTGAGAAATGGGCATTTGGAGAGGGAGAAAGTGCTCAGCATCCAAATCTTGTGAAAATTGGTCAAGAGATAGTGATCAAATGTGGTGGAGTGCCTTTAGCAATACGCACTGTGGGAGGCTTGTTGTCTGGACGCAAAGAGGAATCCTATTGGCTGTATGTGAAAAATAGTGATACTTGGGGTGTGAGCCATATGCCTGAAAGGGAAGATGGTATCTTGTCAGTGCTCAGGTTAAGCTATGATCAATTGCCATCCCATTTAAAAGAATGCTTTGCATATTGCTCCTTACTTCCCAAAGGCCAAGAATTTGATAAGCAAGATTTGATCCACCTATGGATGGCTCAAGGTTTCATTCATTCCTCTGGCCAAGATCAGGAATTAGAAGATGTTGGAAGTTGGTATGTCAATGAATTTGTGTCCAGATCTATCTTCGATGTTGTACGTGAGAATCGTAAAACTGAAATTGTGAAGTGCAGGATGCATGATCTATTGCATGATCTTGCTAAATCAGTTGCAGGAAGCTTGATGGTTAACTCTGATACTACAAATATGTCTGACAGCACCAGGCATGTGGCATTTTGGGATCAGGACCTTACAGAAGATCCAAGTTCATTTCTCAAGTTACCAAAGTTGAGATTGAGAACAATTCTTTGGCATACCAAATGGGGAATCTCCATAAGGTCAGGATCCCATTTGAATGTCCTTCTCTCTGGTTCAACTTACTTGCGTGTGTTGAATTTGAGCAACTCAGGCCTAAAACAACTACCAAACAGCATTGGTAACATGAAACATCTGAGGTATCTAAATCTAAATGGTAACATTGACCTTCAGTCCCTTCCTGATTCCATTTGTGGGCTGCATTTTCTACAGACTCTGAAGTTATCAGGCTGCAGAAGAATTAGTACCTTCCCTAAATATTTCAGCCACTTAGTCTCACTCAGATATTTGGTAATAACCTCTCCATATGTTTTGGAGAAACAACTTGGGACTTTGACATCCCTCCGGTGTTTAACGATTGAACATTGTAGAAATCTTGTGTCTTTGACTGAAGTGACACAGCACCTCATTGCCCTTCGATCACTACATATCCACAACTGTATTAAGTTAACTTCGTTGCCAAGTAGCTTGAAAAACTTTACTGCCCTTGAGAATTTGGAAGTTGTCAACTGCCCCAAGATGGAATCATTGGAGGTGTGCATGCAAGATCTTCATAGATTTCGTTCTTTAACCATCAAAGGTCTACACAAATTGACAACTCTACCAGACAAGCTTGAATGCTATGCCAGCAGTCTTCAGTATCTGTTCATAATAGATTGCATTAGTCTTATGAAACTACCCGAATGCCTGGGGAATCTCTCATCACTGATGCGTATCTACATTAGTTATTGCCCCAACCTGCTAAATCTGCCATATGGGTTCTGTCACCTTACTGCTTTACAAGTTTTGCAAATTGATGGATGTCCCCTTTTAAGCACAAGATGCCGAAGAAATGTTGGTGAGGATTGGCAACAGATAGCTCATGTACGAGAGATCTATGTTGACAGTGTCAAAATCTAG 2541 0.4116 MLVPVSLCKTAARKVVEELASLLNQKYISYSSFEDDFNKLKSNLKAISAVLLDAEKKQEKSHLIQDWLRELQHALHDAEDLLDDINAEALRQNVEAEWRMVSWVRNFYFLSGMGYRVKKIQGRIDDIAKQRRSLCLQELNHDVIVPQREHKPSYLRFTEVVGREEDKKEVIERLFSGSNNGESVLVVPIVGIGGLGKTALIHLVFGDERVKRGFDLRIWVDVSDDLNPEKIRQKKIIRAVDGLDKSVSGMDFLSCLQDKVREKRFLLVLDDVWNCNRVEWLDLKNLLGNGARGSRILVTTRYKNTASIISENNLYQLGALAHGHCISLFEKWAFGEGESAQHPNLVKIGQEIVIKCGGVPLAIRTVGGLLSGRKEESYWLYVKNSDTWGVSHMPEREDGILSVLRLSYDQLPSHLKECFAYCSLLPKGQEFDKQDLIHLWMAQGFIHSSGQDQELEDVGSWYVNEFVSRSIFDVVRENRKTEIVKCRMHDLLHDLAKSVAGSLMVNSDTTNMSDSTRHVAFWDQDLTEDPSSFLKLPKLRLRTILWHTKWGISIRSGSHLNVLLSGSTYLRVLNLSNSGLKQLPNSIGNMKHLRYLNLNGNIDLQSLPDSICGLHFLQTLKLSGCRRISTFPKYFSHLVSLRYLVITSPYVLEKQLGTLTSLRCLTIEHCRNLVSLTEVTQHLIALRSLHIHNCIKLTSLPSSLKNFTALENLEVVNCPKMESLEVCMQDLHRFRSLTIKGLHKLTTLPDKLECYASSLQYLFIIDCISLMKLPECLGNLSSLMRIYISYCPNLLNLPYGFCHLTALQVLQIDGCPLLSTRCRRNVGEDWQQIAHVREIYVDSVKI. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09515 846 Gene3D - 319 407 IPR042197 -
Seca3g09515 846 SUPERFAMILY L domain-like 487 819 - -
Seca3g09515 846 Gene3D - 11 125 - -
Seca3g09515 846 Gene3D - 148 314 IPR027417 -
Seca3g09515 846 Gene3D - 408 499 IPR036388 -
Seca3g09515 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 422 IPR027417 -
Seca3g09515 846 FunFam Probable disease resistance protein At1g63360 408 498 - -
Seca3g09515 846 Pfam Leucine rich repeat 569 626 IPR001611 GO:0005515
Seca3g09515 846 Gene3D Ribonuclease Inhibitor 502 846 IPR032675 -
Seca3g09515 846 Pfam NB-ARC domain 163 409 IPR002182 GO:0043531
Seca3g09515 846 Pfam Rx N-terminal domain 13 94 IPR041118 -
Seca3g09515 846 Coils Coil 64 88 - -
Seca3g09515 846 CDD RX-CC_like 15 129 IPR038005 -
Seca3g09515 846 PRINTS Disease resistance protein signature 259 273 - -
Seca3g09515 846 PRINTS Disease resistance protein signature 356 370 - -
Seca3g09515 846 PRINTS Disease resistance protein signature 186 201 - -
Seca3g09515 846 PRINTS Disease resistance protein signature 657 673 - -
Seca3g09515 846 PANTHER DISEASE RESISTANCE PROTEIN RP 64 814 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09515 Seca-Chr3 235961201 235963741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09515 187 777 WRKY Transcription Factor Family AT5G45050 23.032 9.08e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09515 - - lang:109363325 1108.59