Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09498 ATGGCTTCGGAGAAGAAACTTTCGAATCCCATGAGGGATATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTTGGTGAGAGCGGTGATCGTCTCACCAGAGCTGCCAAGGTGCTGGAGCAGCTCAGTGGCCAAACCCCAGTCTTTTCCAAAGTTTTATGCTTGTTTACAGCAAGGTACACTGTCCGTTCCTTTGGAATTAGGAGAAATGAAAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAAGCAATGCAGCTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTTTGCGAAGAAACTTTAGCGATACTGGGTGTTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGACTTCTTTGTTGTTCTGGAGCGTCCTGGTTATCGTGTGGGACGCCGTCGCCGATGCAAGTCTCGTGTTGGGATCCAGCATCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAAGGTGTGATCCTCAACAAGTCACAGGCAATTGTGTAA 564 0.4628 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKVLCLFTARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09498 187 Pfam Ribosomal protein L5 9 68 IPR031310 -
Seca3g09498 187 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 182 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca3g09498 187 Gene3D - 2 183 IPR022803 -
Seca3g09498 187 FunFam 60S ribosomal protein L11 2 180 - -
Seca3g09498 187 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 178 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca3g09498 187 SUPERFAMILY RL5-like 8 179 IPR022803 -
Seca3g09498 187 Pfam ribosomal L5P family C-terminus 72 170 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09498 Seca-Chr3 235663262 235665441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09498 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 92.513 5.16e-127 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09498 K02868 - gmx:100819731 334.724