Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09490 ATGTTGATATTAATTCTTGGACTAGCCTCAGCTGCTTTTTTAGTGATTGTTTCACTTTATGTCTTCTTTTACCGGAAAAGGCCTTCAAATCATGAGGTTAAAGACATAGAAAGCTCAGAAGATAAGAAGGAAGAGATAGCTCAGAAGGAGGACTTGTTCACCTTTCAAGGTGGGGAGGACTTGACAATATGTGATGTATTGGATGCTCCAGGGGAAGTGATTGGAAAATCCAATTATGCCACACTGTATAAGGCTTTGTTGCAGAGGAGCAACAAAGTGAGGCTGCTGAGGTTTCTGAGACCAGTATGCAGTACAAGAGCTGAAGAATTGGATCAAATGATTCAGTTTCTTGGAAGGATAAGGCATCCTAATTTGGTTCCCCTTCTGGGGTTTTACACTGGGCCAAGGGGTGAGAAGCTTCTTGTTCATCCCTTCTATAGGCATGGGAATCTGACTCAATTCATAAGAGATGGAAATGGAGAGTGTTACAAATGGTCTAACATATATAGAATATCCATTGGTATAGCCAAAGGATTAGAGCATCTTCACACAGGACATGAGAAGCCAATTATCCATGGAAACCTCAAGTCTAAAAACATCCTTTTGGATCGCTCCTACCAACCATACATCTCAGATTCAGGACTCCATCTTCTGTTGAATCCTACAGCTGGCCAAGAAATGCTTGAAAGTTCAGCTGCTCAGGGTTATAAAGCACCTGAGCTTATCAAAATGAAGGATGCTAGTGAAGATACTGATATATATAGCCTTGGGGTAATCTTTCTGGAATTACTTTCAGGAAAAGAACCTATCAATGAGCATCCAACTCCTGATGAGGATTTCTATTTGCCAAATTTCATGAGAAATGCTGTCCTTGGACACAGAATTGCTGATTTATACCATCCAGCCATTCTTCTCAGAAACAGCAGAGATGATAAAATTCCAGTTACAGAAGAATGCATTCTCAAATTTTTCCAACTTGCTATGGCCTGTTGCTCCCCTTCACCTTCAATTAGACCTAACATAAAGCAAGTCATTAGGAAGCTTGAAGAAATTATACACTAG 1062 0.4021 MLILILGLASAAFLVIVSLYVFFYRKRPSNHEVKDIESSEDKKEEIAQKEDLFTFQGGEDLTICDVLDAPGEVIGKSNYATLYKALLQRSNKVRLLRFLRPVCSTRAEELDQMIQFLGRIRHPNLVPLLGFYTGPRGEKLLVHPFYRHGNLTQFIRDGNGECYKWSNIYRISIGIAKGLEHLHTGHEKPIIHGNLKSKNILLDRSYQPYISDSGLHLLLNPTAGQEMLESSAAQGYKAPELIKMKDASEDTDIYSLGVIFLELLSGKEPINEHPTPDEDFYLPNFMRNAVLGHRIADLYHPAILLRNSRDDKIPVTEECILKFFQLAMACCSPSPSIRPNIKQVIRKLEEIIH. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09490 353 Gene3D Phosphorylase Kinase; domain 1 67 145 - -
Seca3g09490 353 SUPERFAMILY Protein kinase-like (PK-like) 71 349 IPR011009 -
Seca3g09490 353 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 42 351 - -
Seca3g09490 353 Pfam Protein tyrosine and serine/threonine kinase 72 348 IPR001245 GO:0004672|GO:0006468
Seca3g09490 353 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09490 353 Gene3D Transferase(Phosphotransferase) domain 1 147 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09490 Seca-Chr3 235592706 235595284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09490 25 351 Carbohydrate Esterase AT5G61570 59.226 2.57e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g09490 PK_Tyr_Ser-Thr 2.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09490 - - gmx:100802295 624.009