Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09486 ATGTCATTTTCCTGTGCCAAAAAATTTTTCAAGAGGTTTTGGGTAGATGAATTCCACACAGGAAGTTTTCCATATAGCAGCTTTTTGTCTAATGATCTCTTACCATCCCTTGGAGCCAGAATCAACCAGGAAACTAGACTAAGAAGATACATAATTTCCCCTTTCAGTCCACAATATAGGGCTTGGGAGATGTTACTGATCATTCTAGTCATTTACTCTGCATGGATTTGCCCCTTTGAATTTGCCTTTCTTCCTTATAAACAAGACACACTATTCATCATTGACAACATTGTCAATGGCTTCTTTGCCATTGACATAGTGATGACATTCTTTGTTGCATATCTAGATAGCCATTCCTACCTACTTGTTGACAATCCAAAGAAAATTGCAATCAGGTACATATCTACCTGGTTCATCTTTGATGTCTGTTCAACTGCACCTTTTCAACCCATCAGCCTCCTCTTCACTGATCACAGCAGTGAGATTGGCTTCAAAATTCTTAACATGCTTCGGTTATGGCGCTTGAGAAGAGTCAGTTCTCTGTTTGCAAGCAGACTTGAGAAGGACATTCGCTTCAATTACTTTTGGACTAGGTGCTCAAAGCTCATTGCTGTAACATTGTTTGCTGTACACTGTGCTGGATGCTTTAACTATCTAATTGCAGATAGGTACCCTGATTCTAAGAGGACATGGATTGGTGCTGTGTACCCAAATTTTAAAGAATTAAGTCTTTGGGACAGATATGTGACATCCATATATTGGTCTATTGTCACACTTACTACTACTGGTTATGGAGATTTGCATGCTGAAAACACAAGAGAGATGCTGTTTGATATCTTTTATATGTTGTTCAACTTAGGATTAACAGCATACATCATTGGAAACATGACAAACCTTGTGGTCCACTGGACAAGCCACACCAGAAATTTTAGAGATACAGTCAGAGCAGCTTCAGAATTTGCATCAAGAAATCACCTGCCCCATGATATACAAGATCAAATATTGTCACACTTATGTTTGAGGTTCAAAACAGAAGGATTGAAGCAACAAGAAACAATAAATGGCATGCCAAAGGCAATTCGTGCAAGCATTGCTTACCATTTATTTTTTCCAGTTATACAAAAGGCCTACCTCTTCCAGGGAGTTTCACATGACTTTCTTTTCCAATTGGTTACAGAAATGGATGCTGAGTACTTCCCCCCTAAGGAAGATGTTATACTACAAAATGAGTCTCCAACAGATCTTTATATGCTGGTTTCAGGGGCAGTGGATCTCATTCGCCATGTTGATGGTTGTGATCAAGTTCTGAAGAAGGCAATCACAGGAGATACATTTGGAGAGATTGGAGTTTTATACAATAGACCACAGCCTTTCACTGTTCGGACCACAGAACTTTCTCAAATTTTAAGACTCAGCAGAACTTCATTAATGAATGCTATTCATGCAAATCCAGAAGAAGCACCACTTATAATGAAAAATCTTTTTATGGTAACAAGGATATTAGACTTTGAAAACTTCTTTCATCAGATATCTCCCCTAATGATGAATTTTTTGTTGTTGTTTTGA 1566 0.3819 MSFSCAKKFFKRFWVDEFHTGSFPYSSFLSNDLLPSLGARINQETRLRRYIISPFSPQYRAWEMLLIILVIYSAWICPFEFAFLPYKQDTLFIIDNIVNGFFAIDIVMTFFVAYLDSHSYLLVDNPKKIAIRYISTWFIFDVCSTAPFQPISLLFTDHSSEIGFKILNMLRLWRLRRVSSLFASRLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKELSLWDRYVTSIYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTAYIIGNMTNLVVHWTSHTRNFRDTVRAASEFASRNHLPHDIQDQILSHLCLRFKTEGLKQQETINGMPKAIRASIAYHLFFPVIQKAYLFQGVSHDFLFQLVTEMDAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRHVDGCDQVLKKAITGDTFGEIGVLYNRPQPFTVRTTELSQILRLSRTSLMNAIHANPEEAPLIMKNLFMVTRILDFENFFHQISPLMMNFLLLF. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09486 521 ProSiteProfiles cAMP/cGMP binding motif profile. 378 485 IPR000595 -
Seca3g09486 521 FunFam Potassium channel KAT3 61 302 - -
Seca3g09486 521 Pfam Cyclic nucleotide-binding domain 398 481 IPR000595 -
Seca3g09486 521 Gene3D Helix hairpin bin 302 368 - -
Seca3g09486 521 Gene3D Jelly Rolls 371 506 IPR014710 -
Seca3g09486 521 PANTHER POTASSIUM CHANNEL AKT1 26 499 IPR045319 GO:0005249|GO:0006813
Seca3g09486 521 SUPERFAMILY Voltage-gated potassium channels 54 300 - -
Seca3g09486 521 SUPERFAMILY cAMP-binding domain-like 305 494 IPR018490 -
Seca3g09486 521 SMART cnmp_10 378 495 IPR000595 -
Seca3g09486 521 Gene3D - 60 301 - -
Seca3g09486 521 Pfam Ion transport protein 60 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g09486 521 FunFam Potassium channel KAT2 366 501 - -
Seca3g09486 521 CDD CAP_ED 378 485 IPR000595 -
Seca3g09486 521 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09486 521 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09486 521 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09486 521 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09486 521 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09486 521 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09486 Seca-Chr3 235559492 235566244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09486 1 499 Ion Channels AT5G46240 76.754 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09486 K21867 - gmx:100800340 911.368