Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09470 ATGAGTAGTGAGAGATATAGCTGGATCCATCTTTGGAATGATTCTGAATTCATTCAGGACATTGTCAAAGATGTTTTGCAAAAAGTGAAGTCAAGGTACCCAAATCAATTGAAGGGACAGGTTGGAATTGAGAAGAATTATGTACCAATTGAACGATCACTGGAAATAGGTACAAGTGAAGTTAGAATCATTGGAATATGGGGCATGGGAGGCATAGGGAAGACCGCCATTGCTACTACTTTATATGCCAAATTGTCTACTCAATTTGAAGGGCATTGCTTCCTTGCAAATGTAAGGGAACAATCAGACAAGAAAGGACCCAGTGCTTTACATAATGAACTTCTTTCTAAATTGTTAGAGGAAGAATGTCTTAGTCTTCATACACCCAAAGTAGAAACCCCTTTCCTCATGAGTAGGCTTGCACGTAAACAAGTTTTCATCATATTGGATGATGTGGCTTCCTCAAAGCAATTAGAAGCTCTAATAGATAAGGATTGCTTGGGACCAGGAAGTAGAGTCATTGTTACAACTAGAGACAAGCACATATTTAGTCAAGTTGATGAAATATATGAGAAGCATCCTAAGATTGGATATGAATGTCTATCAGAAAGTGTTGTAAGATATTGCAACGGTGTTCCTTTGGCTTTAGAAGTTTTAGGTGCAAATCTTCGTTCAAGAAGCAAAGCAGCATGGGAAGATGAATTGAGAAAGCTCCAAAAATTTTCCAATGTGAAAATCCATAACGTGTTAAAATTGAGTTATGATGACTTAGATCCTACCCAAAAGGACATATTTCTAGACATTGCGTGCTTCTTCAAAGGATGGTCTCTAGAACATGTAACAAGTCTATTGGAAGCTTGTGGTTTCTTTCCAGCAAGTGGGATAGAAACCCTTATAGACAAAGCTCTCATAACCATTTCACATTACGAGACAATAGAAATGCATGACTTAATACAAGAAATGGGGCGGGAGATTGTTAACCAAGAATCTATCAAAAACCCTGGGGAACGAAGTCGATTGTGGAAAAGTGAAGAAGTGTTTGATGTATTGAAAAATAACAAGGGAACTGAAGCTGTTGAAGGCATATTTTTCAATATGTCTGATGTTGAGAAGATTCTGCATTTGAGCTCTGATTCCTTTAAAAGAATGACTAACTTGAGATATCTCATAATCTATAATGGGAAGATTCATGGACCTAAGAGTTTTCCATGCCTTACAGCAAGCTTAAAAAGCTTTGGGATGGAGTTCAGAGAGATTGAAAGCCATGAAATCAATGTCCAATCAAAATCTCTCCGTTTCCTAGGACTTTATGGTTGTTTATCTGTCAAGGAAATTTCAGTGATATCAAAGGAAATGAGATGGCTAAATGTAACTAACACCGCCATACGTGAATTGCCACCATCAATTTGGCATAATAGCCAACTCACTGATCTTGAGCTACGAGGCTGTGGCAATCTTAACATTACTAGGAACAAGTTATCTAATCATCCAAGATTGTGGTCTCTCACAGTGCTGGACCTTAATGGTTGCACACAAATCGATGCATTGGATCTGCAGTTCATCTTTGATGTCTTGCCACGTTTAGTAAAGCTAGATTTGTCAAACTGCTCCAACATAAGAGCACTCCCTGACAACACCAAAAACCTTTCAACGTTGAGAGAGCTTAGGTTAAATGATTGTAGGAATCTTGTGTCTCTACCAGAGCTTCCATCATCCCTGGAAGAGTTGGAAGCCTTGAATTGCACTTCTTTAGAGGGAGACTTCACTCATAGGCTAGTGAATGAGCACATTGTTCAAAACATGCCCTGCTCATACTATTCTGATTTTTATCTCAGTAAGCGTGCTTCATCGGTAACAAGAACTTCACCCACTTCCTAA 1878 0.386 MSSERYSWIHLWNDSEFIQDIVKDVLQKVKSRYPNQLKGQVGIEKNYVPIERSLEIGTSEVRIIGIWGMGGIGKTAIATTLYAKLSTQFEGHCFLANVREQSDKKGPSALHNELLSKLLEEECLSLHTPKVETPFLMSRLARKQVFIILDDVASSKQLEALIDKDCLGPGSRVIVTTRDKHIFSQVDEIYEKHPKIGYECLSESVVRYCNGVPLALEVLGANLRSRSKAAWEDELRKLQKFSNVKIHNVLKLSYDDLDPTQKDIFLDIACFFKGWSLEHVTSLLEACGFFPASGIETLIDKALITISHYETIEMHDLIQEMGREIVNQESIKNPGERSRLWKSEEVFDVLKNNKGTEAVEGIFFNMSDVEKILHLSSDSFKRMTNLRYLIIYNGKIHGPKSFPCLTASLKSFGMEFREIESHEINVQSKSLRFLGLYGCLSVKEISVISKEMRWLNVTNTAIRELPPSIWHNSQLTDLELRGCGNLNITRNKLSNHPRLWSLTVLDLNGCTQIDALDLQFIFDVLPRLVKLDLSNCSNIRALPDNTKNLSTLRELRLNDCRNLVSLPELPSSLEELEALNCTSLEGDFTHRLVNEHIVQNMPCSYYSDFYLSKRASSVTRTSPTS. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09470 625 Gene3D - 21 191 IPR027417 -
Seca3g09470 625 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 583 IPR044974 GO:0006952
Seca3g09470 625 SUPERFAMILY "Winged helix" DNA-binding domain 245 351 IPR036390 -
Seca3g09470 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 268 IPR027417 -
Seca3g09470 625 Gene3D Ribonuclease Inhibitor 319 592 IPR032675 -
Seca3g09470 625 Pfam NB-ARC domain 59 193 IPR002182 GO:0043531
Seca3g09470 625 SUPERFAMILY L domain-like 371 590 - -
Seca3g09470 625 PRINTS Disease resistance protein signature 209 223 - -
Seca3g09470 625 PRINTS Disease resistance protein signature 63 78 - -
Seca3g09470 625 PRINTS Disease resistance protein signature 523 539 - -
Seca3g09470 625 PRINTS Disease resistance protein signature 139 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09470 Seca-Chr3 235219630 235222073 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09470 13 585 WRKY Transcription Factor Family AT4G12020 31.034 6.29e-73 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09470 - - gmx:100809963 503.442