Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09468 ATGGCTAACCAGCAAATGATAAATTTTCCTGCTTCTTCTTCCTCTACGTCTATCAAAAAACATGATGTTTTTGTTAGTTTTCGAGGGGAAGATACTCGCCGTAACTTCACAAGCCATCTTTACAATGCTTTGGCCCAAAAGAAAATTGAAACGTATATAGACTACCGGCTTGAAAAGGGAGATGAGATCTCGCCTGCACTGATGAAAGCAATTGAAGAGTCACATGTATCTGTTGTCATCTTTTCAGAAGACTATGCTTCCTCAAAGTGGTGCTTGATTGAAATCAGTAAGATTTTAGAATGCAAAAAGGATCATGGACAAATTGTTATTCCTGTCTTCTATGAAATAGATCCATCACATGTAAGGAAGCAGATAGGGACCTACCACCAAGCATTTCAAAAACATGAACGAGATCTGAAGATCAACAATCACACACTGCAAAAATGGAGAGATGCTCTCACAGAAGCGTCCAATTTGTCTGGGTGGGACTCTCGAACTTACAGGACTGAATCTGAATTCATTAAGGACATTGTTAAAGACATTTTACAAAAATTGAGTCTCATATACCCAATTGAATTGAAGGGAGTGGTTGGGATCGAGGAAAATTATGTAGGGGTTGAATCATTATTGGAGATTGGCTCAAGAGAAGTTCGAATCATTGGAATATGGGGTATGGGTGGTATAGGAAAAACCACCTTGGCAATTGCTTTACATGCCAAACTGTCTCCTCAGTTTGAAGAGGAAGAAAATCTTCATGTTGATGTAACCAAAGTTGAATTTTGTTTTGTGACGAGTAGGCTTAGACGTAAAAAGGTTTTTATTGTTTTGGATGATGTGGCTACATCAGAACAGTTAGAAGATCTAATCGGTAATATTCATGATTGTTTGGGAGCAGGAAGTAGAGTGATTGTAACAACTAGAGATAAGCATATATTTAGCCATGTTGATGGAATATATGAGGTCAAGGAATTGAATGACCATGACTCTCTTGAGCTTTTTTGTTTGAATGCTTTCAAAGAAAAGCATCCTAAAAATGGATTTGAAGAGCTATCAGAAAGTGTAATAGCTTATTGCAAAGGAAATCCGTTGGCTTTAAAAGTTTTGGGTGCACGTCTTCGTTCAAGAAGTAAAGAAGCATGGAAAAGTCATCTGAGAAAGCTCCAAAAGATTCCAGATGTGAAGATTCATAATGTGTTAAAATTGAGTTTTGATGACCTGAATCGTACCCAACAGGACATATTTCTAGACATTGCATGCTTCCTCAAAGGAGAATCTAGAGATCATGTGATAAGTCTACTAGAAGCTTGTGATTTCTTTCCAGAAATTGGGATAGAAGTACTTTTAGATAAAGCTCTTATAACTATTTCAAATAACGATAAAATAGAAATGCATGACATGATACAAGAAATGGGTTGGAATATTGTTCATGAAGAATCTATCAGAGAGCCTGGAAGACGGAGTCGATTGTGGGATCCTGATGAAGTGTGTGATGTATTGACATATAATAAGGGAACTGAAGCTATAGAAGGGTTAAGTCTAGACGTGTCTAAAATTGAGGATCTGCATTTGAGGTATAATTCCTTTGCCAAAATGACTAAGATGAGATTTCTTAAATTCTATGCTGGGAAGTGGAGTGACAGATGCCATATATACCTTCCCAACGGTCTTCAATCATTGTCTGACAATTTAAGGTACCTTCAATGGCATGGATATTGTTTAGTGTCTTTGCCATCAACCTTTAGTGCTAAATGGCTTGTTGAGCTTTCCATGCCCTACAGCAACCTTGAAAAGCTTTGGGACGGTGTTCAGGATCTTGTGCATTTAAAGGAAGTTGACCTTAGGTTCTCCAAAAACCTGGTTGCAGTCCCGGACTTATCAATGGCCACAAATCTTGAAGGGTTATCTCTTCTTCATTGTAAAAGTTTGCGTCAAGTTCATCCATCCATTTTGTCTCTCCATAAGCTCAAATATTTGGATTTAGAAGGTTGCACAGAGATTGAAAGCCTTCAAACTGACATTGATTTAGAATCTCTCTGTGACCTCCGTCTCAGCCACTGCTCAAACCTGAAGGAATTTTCAATCTCCTCAAAGAACCTGGTGAGATTGTGGCTAGGTGGTACAGCTATCCAAGAATTTCCTTCATCAATTTGGCGCTGTAAGAGACTTCAACTTATTAATCTAGAAGGTTGCGTCAATCTTGACAGTGTTGGGAATCAGTTATCTCCTGATCTAGGAATGGGATCTCTTGGAGTCCTGGTCCTATCTGGGTGCAAACAACTGAACGCATCAAATTTATGTTGTATTCTTGATAGGCTGCTGTTTTTAAAGTGGCTAAGTATGGAAGATTGTTGCAACTTACAAGCACTCCCTGATAGCATTGGCTTCTTAAAATCATTAGAGAGCTTAAAACTAAGTGGAAGCAATGTTGAGAGCTTGTCTGCAAATGTCAAAAACCTTTTGAAGTTGAGAGAGCTTTGGTTAGACAATTGCAAGAAACTTGTGCAGCTGCCAGAGCTTCCACCTTCCCTACAAATATTAAGTGCCGTTAACTGCACATCTTTGGAGACAGACTTCACTCAACAGCTAGTGCTAGAGAAAAACATATCCTTTTCACTTAAACATGGACTTAAAGAACGTCCTAGATTTGCTTTCCTCCCTGGAGCCCAAATTTCAGGTAGGTTTAGCTTTTTGGCTGAAGGGACTTCAATAACTGTATCTCATCTTCCACAATCTGGCTTACACGGTTATATCCTTTGCCTCATTCTTTCTCAATCACCACCAAATGGTAAATATGCATATGTTAAATGTGTTATCGACAAAGATTCTGAAAGAACCGGTAGCAAATATACCTTTCCGATTAATCAGAGTTTGATTTCTGATCACGTGTTTCTTCGGTATATTGACATCAATAAAGGTGAGGATAATCCTTTTTATAGGGAAATGCAAAAAAGTGGAGTGTATGATTATTGCAACATATCATTTAAATTCAATCTTCATGGAGACAATGGAGAATGGTTGACAAATAGGATAAAGGGGTGTGGGGTCTACCCAGTGTATGCCTTTGAACATGGCTATTCCTCCAGACACAAGGGATCGGTGTTGGAGTTAGGTGGTGGTTCAAAAGATATCGCTGAGTTACAACCCAGAGCAATTGGATTTGAAGTCAAAGGATCTAAATCTAACCATGACAATGATGATAACCAGACTAAGAAATTACAGCAAGTTATGAACCAAGACAATATTACAACAGGTATGCAGCATAAAAAAGAGGACTTCAAAGGAAAATCACCATATCACCACTTCACAGAACATGGTTGTGAGGGACAACCAGAAAGTTTCAAGGATGAGGATTATCTGATGAGTTCAGTGCCCAAGAATGATATTATCCCCTCTGACACTCCAAGTGTTTCCTACATCGATTCAAATCAGACTATTGAAGTGTTTGAAGAAAAATACTTGATCGACAATCAAGTCAATTGTTTTGAGCCATTCATGTTTGAGAAAGCCCATACTTTTGTGGAGATTGACAATCAACCTCTTGAACCAGATTGGGATCCAATTGCTGAGCTCGAGAGCATGTTATGTGATAGTTATAAGTTGTCTGCCATATCCACTCAATCAACAACTATTTCAAACACTGAACAGGGTCCAAATGTGGGAACTATCCTTCAAAAATTAGAGATGCTTTTAGAGACCTCCCTTGAAATTATTTCTTCAGACAATGAAGTCAAGCAAAAATTCCATGATGTTCTGAAACAACTTGACCAATTTGAAGACCAAGTCCCTGTTAAACTCCATCATGTAATTTGCAAGTTAAAAACTTTCATTGAAGGTGTTGATGTAGGATTTGTGGCCGCCCAAAAAACCATCCAAGATTATGATCAGTTGCTCCAGTCTAGGTCTCTTCTATCAAAGCAATTGAAAAGTGCCAAAGCCCGACAAGACCAAATTAATTCAAATGTCTCTCAAGGTAAAATACAATTTGAAAAGATTAATTCTAAGATTGTTGAACTAGAACAAAAATTAAGTGATTTAGTTGAGACTAGAGACAAGCTAAAGAGAGCCTTGGATGATTATGATGTTGAAAAGAGTAAGCTGGTGTTTGAGGTAGCACAATGGGTTCCAGAATGCAAGACTGTCACCACGGCTTTGAAGAAGTCTGAGACTTCTTACAAAATGGCCCTAACCAATAAGAAGAAAACTGAAGATGAATGGGCTAACCTGAAGAAGAGCTTTGAAGACAATAAGATTTGA 4254 0.382 MANQQMINFPASSSSTSIKKHDVFVSFRGEDTRRNFTSHLYNALAQKKIETYIDYRLEKGDEISPALMKAIEESHVSVVIFSEDYASSKWCLIEISKILECKKDHGQIVIPVFYEIDPSHVRKQIGTYHQAFQKHERDLKINNHTLQKWRDALTEASNLSGWDSRTYRTESEFIKDIVKDILQKLSLIYPIELKGVVGIEENYVGVESLLEIGSREVRIIGIWGMGGIGKTTLAIALHAKLSPQFEEEENLHVDVTKVEFCFVTSRLRRKKVFIVLDDVATSEQLEDLIGNIHDCLGAGSRVIVTTRDKHIFSHVDGIYEVKELNDHDSLELFCLNAFKEKHPKNGFEELSESVIAYCKGNPLALKVLGARLRSRSKEAWKSHLRKLQKIPDVKIHNVLKLSFDDLNRTQQDIFLDIACFLKGESRDHVISLLEACDFFPEIGIEVLLDKALITISNNDKIEMHDMIQEMGWNIVHEESIREPGRRSRLWDPDEVCDVLTYNKGTEAIEGLSLDVSKIEDLHLRYNSFAKMTKMRFLKFYAGKWSDRCHIYLPNGLQSLSDNLRYLQWHGYCLVSLPSTFSAKWLVELSMPYSNLEKLWDGVQDLVHLKEVDLRFSKNLVAVPDLSMATNLEGLSLLHCKSLRQVHPSILSLHKLKYLDLEGCTEIESLQTDIDLESLCDLRLSHCSNLKEFSISSKNLVRLWLGGTAIQEFPSSIWRCKRLQLINLEGCVNLDSVGNQLSPDLGMGSLGVLVLSGCKQLNASNLCCILDRLLFLKWLSMEDCCNLQALPDSIGFLKSLESLKLSGSNVESLSANVKNLLKLRELWLDNCKKLVQLPELPPSLQILSAVNCTSLETDFTQQLVLEKNISFSLKHGLKERPRFAFLPGAQISGRFSFLAEGTSITVSHLPQSGLHGYILCLILSQSPPNGKYAYVKCVIDKDSERTGSKYTFPINQSLISDHVFLRYIDINKGEDNPFYREMQKSGVYDYCNISFKFNLHGDNGEWLTNRIKGCGVYPVYAFEHGYSSRHKGSVLELGGGSKDIAELQPRAIGFEVKGSKSNHDNDDNQTKKLQQVMNQDNITTGMQHKKEDFKGKSPYHHFTEHGCEGQPESFKDEDYLMSSVPKNDIIPSDTPSVSYIDSNQTIEVFEEKYLIDNQVNCFEPFMFEKAHTFVEIDNQPLEPDWDPIAELESMLCDSYKLSAISTQSTTISNTEQGPNVGTILQKLEMLLETSLEIISSDNEVKQKFHDVLKQLDQFEDQVPVKLHHVICKLKTFIEGVDVGFVAAQKTIQDYDQLLQSRSLLSKQLKSAKARQDQINSNVSQGKIQFEKINSKIVELEQKLSDLVETRDKLKRALDDYDVEKSKLVFEVAQWVPECKTVTTALKKSETSYKMALTNKKKTEDEWANLKKSFEDNKI. 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09468 1417 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Seca3g09468 1417 SUPERFAMILY L domain-like 463 872 - -
Seca3g09468 1417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 417 IPR027417 -
Seca3g09468 1417 SMART till_3 20 159 IPR000157 GO:0007165
Seca3g09468 1417 Pfam Leucine Rich Repeat 585 603 IPR011713 -
Seca3g09468 1417 Pfam TIR domain 20 190 IPR000157 GO:0007165
Seca3g09468 1417 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Seca3g09468 1417 FunFam Disease resistance protein RPS4 505 697 - -
Seca3g09468 1417 Gene3D Ribonuclease Inhibitor 494 696 IPR032675 -
Seca3g09468 1417 Gene3D Ribonuclease Inhibitor 697 869 IPR032675 -
Seca3g09468 1417 FunFam Disease resistance protein (TIR-NBS-LRR class) 325 407 - -
Seca3g09468 1417 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Seca3g09468 1417 Gene3D - 323 407 IPR042197 -
Seca3g09468 1417 Coils Coil 1293 1313 - -
Seca3g09468 1417 Coils Coil 1328 1362 - -
Seca3g09468 1417 Gene3D - 17 188 IPR035897 -
Seca3g09468 1417 PRINTS Disease resistance protein signature 219 234 - -
Seca3g09468 1417 PRINTS Disease resistance protein signature 358 372 - -
Seca3g09468 1417 PRINTS Disease resistance protein signature 650 666 - -
Seca3g09468 1417 Gene3D - 240 320 IPR027417 -
Seca3g09468 1417 Pfam NB-ARC domain 265 391 IPR002182 GO:0043531
Seca3g09468 1417 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 739 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09468 Seca-Chr3 235204085 235210030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09468 9 917 WRKY Transcription Factor Family AT4G12020 30.658 1.45e-106 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09468 - - gsj:114410062 1759.58