Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09467 ATGGCTAAGCAGCAAATTATCAGTGCTTTTGCTTCTTCCTCTACTTCTTCTGTTGCCTCTTTGAAAAAATATGACGTTTTTCTTAGCTTTCGTGGTGAGGATACTCGCAAAAACTTCACAAGTCATTTGTATGATGCTTTGAGCCGAAAGAAAGTTGAAACATTTATAGATTATGAGCTTGAAAAAGGAGATGAGATCTCACCAGCACTTATCAAAGCAATTGAGGAGTCACATGCATCTATAGTCATCTTCTCAAAAAACTATGCTTCCTCAAAATGGTGTTTAGATGAACTCATCAAGATTCTAGAATGCAAGAAAGATCAGGGACAGATTGTTATACCTGTTTTCTACAACGTAGATCCATCACATGTGAGGAAGCAGACAGTGAGCTATAAAAAAGCCTTTGCAAAACATGAGAGAGATTTGAAGCTCAACAATGACAAGTTGCAGAAATGGAAAGCTGCTCTGACTGAAGCAGCCAATTTAACTGGTTGGGACTCTAGAACTTACAGGAATGAATCTGAATTCATTCAGCACATTGTCAAAGATGTCATGCAAAAAGTGAAGTTGAGGTACCCAAATCAATTGAAGGGACTGGTTGGAATTGAGAAGAATTATGTACCAATTGAGCGATTACTGGAAATAGGTACAAGTGAAGTTCGAATCATTGGAATATGGGGCATGGGTGGCATAGGGAAGACCACCCTTGCCACTGCCTTATATGCCAAACTGTCTTCTCAGTTTGAAGGTCATTGCTTCCTTGAAAATGTAAGGGAACAATCAGACAAGAATGGACTCAATGTTTTAGGTAATGAACTTTTTTCTAAGTTGTTAGAGGAAAAATGTCTTTGTCTTCATGCACCCAAAGTTGAAACCCCTTACCTCATGAGTAGGCTTGGACGTAAACAAGTTTTCATCGTGTTGGATGATGTGGCTACCTCAGAGCAATTAGAAGCTCTAATAGATAAGGATTGCTTGGGACCAGGAAGTAGAGTCATTGTTACAACTAGAGACAAGCACATATTTAGTCAAGTTGATGAAATATATGAGGTCGATAGTTTAAACTTTGATGACTCTCTTCACCTTTTTTGTTTGCATGCCTTTAGACAGAAGCATCCTGAAATTGGATTTGAAGGTCTATCAGAAAGTGCTGTAAATTATTGCAACGGTGTTCCTTTGGCTTTAAAAGTTTTAGGATCAAATCTTCGTTCAAGAAGCAAAGCAGCATGGGAAGATGAATTGAGAAAGCTCCAAAAGTTTTCCAATGTGGAAATTCATAAGGTGTTGAAATTGAGTTATGATGACTTAGATCCTACTCAGAAGGACATATTTCTAGACATTGCGTGTTTCTTCAAAGGATGGCCTCTAGAAGATGTAACAAGTATATTGGAAGCTTGTGATTTCTTTCCAGCAAGTGGGATAGAAACCCTTATAGACAAAGCTCTCATAACCATTTCATATGACCAGAAAATGGAAATGCATGACTTAATACGAGAAATGGGTCAGGAGATTGTTAACCAAGAATGTATCAAAAACCCTGGAAAACGAAGTCGGTTGTGGAAAAGTGAAGAAGTGTTTGATGTATTGAAAAATAACAGGGGAACTGAAATTGTTGAAGGCATAATTTTCAATATGTGTGATGTTGAGAAGATTCTGCATTTGAGTTCTGATTCCTTTAAAAGGATGACTAACTTAAGATATCTCATAATCTATTATGGGAATATTCATGAACCTGAGACTAAGGTGTACCTTCCTAACAATTTGGAGTTTTTGTCTGATAAATTGAGGTACCTTCGTTGGGATGGATTTTGTCTTGAGTCTTTGCCATCTACCTTTTCTGCTGAAATGCTTGTAGAGTTTTCCATGCCTTTCAGCAATCTTAAAAAACTTTGGGATGGAGTTCAGAATCTTATAAATTTGAAGAAAATTGACCTTTCCTGGTCCCGACACCTGGTTGAGGTCCCAGACTTATCAAGGGCTACGAATCTTGAAATAGTGCACCTTGTTCGTTGTTCAGGCTTGTGTAAGCTCCATCCATCCATTTTATCTCTCCCCAAGCTTACACGTCTAGATTTAACACACTGCAGAGAGATTGAAAGCCATGAAATCAATGTTCAATCAAAATCTCTCCGCTTCCTAGGACTTGGCGGTTTATCTGTCAAGGAATTTTCAGTGATGTCAAAGGAAATGACAGAGCTGAGTGTAACTGTCACTGCTATACATGAATTGCCACCATCAATTTGGCATAATAGCAAACTCATTTCTATTTGCCTACAACGATGTGGCAATCTTAACATTAATGGGAACAAGTTATCCAATCATCCAAGATTGTGGTCTCTCAGAGAACTGAGCCTTTCTGGGTGCACACAAATCAATGCATTAGATCTGCAGTTCATCTTTGATGTCATGCAATGTTTAATATACCTAGATTTGTCAAACTGTTGCAACATAAGAGCACTCCCTGACAACACCAAAAACCTTTCAAGTTTGACAAGGCTTTATTTAGATGATTGCAGGAATCTTGTGTCTCTACCAGAGCTTCCATCATCCCTGGAAAAGTTGAGTGCCTTGAATTGCACTTCTCTAGAGGGAGACTTCACTATTCATAGGCTAGTGAATGAGCACATGTTTCAAAACTTGCCTGAAAAGGGTTATATCATTAAGTCTGTTGTATTCCCTGGAGCCAAAGTTCCGGATTTGTTTAGCTTTCGTACATCAGGGGCTTCAATAACAATTTCTCATGATCCAAAAGTTCATTTGCAGGGTTTCATTTTTTGCGTCATTCTTTCTGATGGAATCTTCGATGGTATCAGTGAGATTATTATTAATATTATATCTGAAAACGACCAAGTGCTTGGAGAACACAGTCACCATCTATGGGATAAAAGTTTGATTTCAGATCATGTGGTGTGTCGGTATGGTAACAATTTCAGATCATTTGATCAGTGCAAATTATCATTTGAATTCAAATTACAATCGTATTTTGGAGAACTGTCAACAGTGGGGATAAAGGGGTGTGGGGTCTTCCCAGTCCATAAAGGGAAAGGAAGAGGACTTGAACAACTTACTCCTAGAAAGAAGAGGAAGAGAGAACTTGACTAA 3102 0.3827 MAKQQIISAFASSSTSSVASLKKYDVFLSFRGEDTRKNFTSHLYDALSRKKVETFIDYELEKGDEISPALIKAIEESHASIVIFSKNYASSKWCLDELIKILECKKDQGQIVIPVFYNVDPSHVRKQTVSYKKAFAKHERDLKLNNDKLQKWKAALTEAANLTGWDSRTYRNESEFIQHIVKDVMQKVKLRYPNQLKGLVGIEKNYVPIERLLEIGTSEVRIIGIWGMGGIGKTTLATALYAKLSSQFEGHCFLENVREQSDKNGLNVLGNELFSKLLEEKCLCLHAPKVETPYLMSRLGRKQVFIVLDDVATSEQLEALIDKDCLGPGSRVIVTTRDKHIFSQVDEIYEVDSLNFDDSLHLFCLHAFRQKHPEIGFEGLSESAVNYCNGVPLALKVLGSNLRSRSKAAWEDELRKLQKFSNVEIHKVLKLSYDDLDPTQKDIFLDIACFFKGWPLEDVTSILEACDFFPASGIETLIDKALITISYDQKMEMHDLIREMGQEIVNQECIKNPGKRSRLWKSEEVFDVLKNNRGTEIVEGIIFNMCDVEKILHLSSDSFKRMTNLRYLIIYYGNIHEPETKVYLPNNLEFLSDKLRYLRWDGFCLESLPSTFSAEMLVEFSMPFSNLKKLWDGVQNLINLKKIDLSWSRHLVEVPDLSRATNLEIVHLVRCSGLCKLHPSILSLPKLTRLDLTHCREIESHEINVQSKSLRFLGLGGLSVKEFSVMSKEMTELSVTVTAIHELPPSIWHNSKLISICLQRCGNLNINGNKLSNHPRLWSLRELSLSGCTQINALDLQFIFDVMQCLIYLDLSNCCNIRALPDNTKNLSSLTRLYLDDCRNLVSLPELPSSLEKLSALNCTSLEGDFTIHRLVNEHMFQNLPEKGYIIKSVVFPGAKVPDLFSFRTSGASITISHDPKVHLQGFIFCVILSDGIFDGISEIIINIISENDQVLGEHSHHLWDKSLISDHVVCRYGNNFRSFDQCKLSFEFKLQSYFGELSTVGIKGCGVFPVHKGKGRGLEQLTPRKKRKRELD. 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09467 1033 Gene3D Ribonuclease Inhibitor 709 867 IPR032675 -
Seca3g09467 1033 SMART till_3 23 162 IPR000157 GO:0007165
Seca3g09467 1033 Gene3D - 186 352 IPR027417 -
Seca3g09467 1033 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 190 - -
Seca3g09467 1033 Pfam Leucine Rich Repeat 617 635 IPR011713 -
Seca3g09467 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 447 IPR027417 -
Seca3g09467 1033 ProSiteProfiles TIR domain profile. 22 188 IPR000157 GO:0007165
Seca3g09467 1033 Gene3D - 21 185 IPR035897 -
Seca3g09467 1033 Gene3D Ribonuclease Inhibitor 542 708 IPR032675 -
Seca3g09467 1033 PRINTS Disease resistance protein signature 682 698 - -
Seca3g09467 1033 PRINTS Disease resistance protein signature 298 312 - -
Seca3g09467 1033 PRINTS Disease resistance protein signature 388 402 - -
Seca3g09467 1033 PRINTS Disease resistance protein signature 222 237 - -
Seca3g09467 1033 FunFam Disease resistance protein (TIR-NBS-LRR class) 355 437 - -
Seca3g09467 1033 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 165 IPR035897 -
Seca3g09467 1033 Pfam NB-ARC domain 209 435 IPR002182 GO:0043531
Seca3g09467 1033 SUPERFAMILY L domain-like 493 861 - -
Seca3g09467 1033 Gene3D - 353 437 IPR042197 -
Seca3g09467 1033 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 764 IPR044974 GO:0006952
Seca3g09467 1033 Pfam TIR domain 23 198 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09467 Seca-Chr3 235180799 235187874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09467 19 858 WRKY Transcription Factor Family AT4G12020 32.417 3.53e-106 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09467 - - cam:101499873 1093.18