Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09466 ATGGAAAGTCATTTCTACTACTCTCCCTACAGCCCTACCAACTACAGAGTGGGATTGGGAGCAGCAGCACCATCTCCCACTCGATTCCTGGACTCCAATACAATGTTCCTCTCCCACCACCGCACGGATGCCGCCACCGCTGCCGCTCTCCGCTACTCCGCCGCCGCCGCCGCCGCCGCCGACATAGACATTGGCCCGCCTGGAGTTGCTTCAAGAATCCCCTCTTCTACAACCGCCAACTTGCTCTCTCAGCCTTCTCCTTGGTCTTCCGCCATCGCCGCCGCAAATGTCGGCCATACTGCCCTTGACCTGAAACGCTCTTCTGACGCGCTCTACCATCCGACCATTTTGAGTACAATTGGGCAAAGTGAAGCCTGGTATACTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGGAAGCAATATGCCTGTATATCCACAGAGGCCAGGGGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGCTCCAAATATTGCTACAAGTGAAACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATATTTTCTAAAAACTCAAAGATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAAGGGTTCCTCTGAAAATGCTGATGTTTCTGGCTTACCTGAAAGGCCATTAGAGCCCCCTTGTGCGTTCTACATGAAAACTGGAATATGTAAATTTGGTGCTGCATGCAAATTCCATCACCCCAAGGATATTCAGATTCAGTTGTCTGATGAAACGAGTCGTATTGTTGAGCTGACACAAACAAATTCTATGTTGGAGGGGGCAACAGGAGATACACAACCAATTAAGCCTCTTATATCTCCATTGTTGCATAATAGCAAAGGTCTTCCTGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAATGTAATTAATCCGCCTATTGCTGCATTAGGCCCTTCTGTTTTGGCATCCTCAGCTGCTAATCTGAACATTGGAGTTATTAATCCAGCTACATCTGTTTATCAAGCTTTCGACCCCAGGCTGTCAAATCCAACGTCTCAGATGGGAGTAGCAGAGACTATCTATCCTCAACGGCCAGGACAAATTGAGTGCGATTACTATATGAAAACTGGTGACTGTAAATTTGGGGAAAGATGCAAGTTCCATCACCCAATTGATCGCTCAGCACCATCGCTGTCAAAGCAGGCTCCCCAACAAACTGTTAAACTCACTCCTGCAGGACTTCCAAGAAGAGAGGGTGCTGTGATCTGTCCATATTATTTGAAAACTGGCACGTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTATGGAGATGGCAAAGTCACAAGGAACATCTGCAACTAATGGAGAGGAAGTTTAA 1524 0.4738 MESHFYYSPYSPTNYRVGLGAAAPSPTRFLDSNTMFLSHHRTDAATAAALRYSAAAAAAADIDIGPPGVASRIPSSTTANLLSQPSPWSSAIAAANVGHTALDLKRSSDALYHPTILSTIGQSEAWYTTNSLAKRPRYESGSNMPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEAPNIATSETLPERPGEPDCPYFLKTQRCKFGSRCKFNHPKGSSENADVSGLPERPLEPPCAFYMKTGICKFGAACKFHHPKDIQIQLSDETSRIVELTQTNSMLEGATGDTQPIKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPPIAALGPSVLASSAANLNIGVINPATSVYQAFDPRLSNPTSQMGVAETIYPQRPGQIECDYYMKTGDCKFGERCKFHHPIDRSAPSLSKQAPQQTVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSATNGEEV. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09466 507 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
Seca3g09466 507 SUPERFAMILY CCCH zinc finger 152 177 IPR036855 GO:0046872
Seca3g09466 507 ProSiteProfiles Zinc finger C3H1-type profile. 459 487 IPR000571 GO:0046872
Seca3g09466 507 SMART c3hfinal6 150 177 IPR000571 GO:0046872
Seca3g09466 507 SMART c3hfinal6 320 347 IPR000571 GO:0046872
Seca3g09466 507 SMART c3hfinal6 459 486 IPR000571 GO:0046872
Seca3g09466 507 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Seca3g09466 507 SMART c3hfinal6 202 229 IPR000571 GO:0046872
Seca3g09466 507 SMART c3hfinal6 406 433 IPR000571 GO:0046872
Seca3g09466 507 SUPERFAMILY CCCH zinc finger 463 486 IPR036855 GO:0046872
Seca3g09466 507 SUPERFAMILY CCCH zinc finger 248 271 IPR036855 GO:0046872
Seca3g09466 507 ProSiteProfiles Zinc finger C3H1-type profile. 150 178 IPR000571 GO:0046872
Seca3g09466 507 SUPERFAMILY CCCH zinc finger 324 348 IPR036855 GO:0046872
Seca3g09466 507 SUPERFAMILY CCCH zinc finger 408 434 IPR036855 GO:0046872
Seca3g09466 507 FunFam zinc finger CCCH domain-containing protein 37 404 500 - -
Seca3g09466 507 ProSiteProfiles Zinc finger C3H1-type profile. 202 230 IPR000571 GO:0046872
Seca3g09466 507 ProSiteProfiles Zinc finger C3H1-type profile. 406 434 IPR000571 GO:0046872
Seca3g09466 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 346 IPR000571 GO:0046872
Seca3g09466 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 204 229 IPR000571 GO:0046872
Seca3g09466 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 270 IPR000571 GO:0046872
Seca3g09466 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 152 176 IPR000571 GO:0046872
Seca3g09466 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 409 432 IPR000571 GO:0046872
Seca3g09466 507 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 463 486 IPR000571 GO:0046872
Seca3g09466 507 FunFam Zinc finger CCCH domain-containing protein 37 305 353 - -
Seca3g09466 507 FunFam Zinc finger CCCH domain-containing protein 37 188 235 - -
Seca3g09466 507 Gene3D - 149 240 - -
Seca3g09466 507 Gene3D - 405 501 - -
Seca3g09466 507 FunFam Zinc finger CCCH domain-containing protein 37 109 187 - -
Seca3g09466 507 SUPERFAMILY CCCH zinc finger 207 230 IPR036855 GO:0046872
Seca3g09466 507 ProSiteProfiles Zinc finger C3H1-type profile. 320 348 IPR000571 GO:0046872
Seca3g09466 507 PANTHER PROTEIN PHOSPHATASE RELATED 132 279 - -
Seca3g09466 507 Gene3D - 241 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09466 Seca-Chr3 235116534 235125608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09466 318 501 C2H2 Transcription Factor Family AT3G02830 37.297 2.85e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g09466 zf-CCCH 1.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09466 - - gmx:100801417 787.719