Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09465 ATGCAGATGAATAACAATGTGTCAGAAGAAGCTCACAAGACAGATCATAGTTGTGCAAATTCATCAAATGATCATTCAACAAGTCATGGTAGAAAGGTGAATAATAATCAAGCAACAAAAGATGCCTTCACAAATGAGCAAACAACCAATAGAGAAGGACACATAGATCAATGTTCTAAAAATAATGCAAAGATGGCAAGTAAACCAGCATCTAAGCCTCAGAAATTAGAATCACATATAAGGAACATTTCTGAATTTACCACTAATCAACGCCCAAGTCCAGGTGCAAGAATGCCTTCAAATTGTGACCCTTCAACCACCTCATCAGGAGTAACAACAGGAACTGCAAGAGGGTTTGCTATGTCTTCAAAGACCACAAATCATGGTCAAGGGAGTGGAACTAGCTCTCGTAGTGACAGTTTAGAGAGTAGTAGCAGTCAACACATTAAGCCACACACTGGAGGTGATGTAAGGTGGGATGCAATTAACAAAGTTTCAAGAGGCTCCAATCTTAACCTTAGCCATTTCAGGCTTTTGAAACGTGTTGGATATGGAGATATTGGAAGTGTATATCTTGTGGAACTTAAAGGGACTGGAACCTTCTTTGCCATGAAAGTAATGGATAAGGCTTCTCTTGCAAGTAGAAACAAGCTTCTGAGAGCACAGACAGAAAGGGAGATTCTTGGACTTCTTGACCACCCTTTCTTGCCTACATTATATTCTTATTTTGAGACTGAAAAGTATAACTGTTTGATCATGGAATTCTGTAGTAGTGGTAGTCTGCATTCTCTTCGATTGAAGCAACCTAACAAGCATTTCACAGAAGAAGCTGCACGGTTTTATTGTTCAGAGATTTTGTTAGCTCTTGAGTACCTACACATGCTAGGCATTGTGTACAGAGACCTAAAACCAGAGAATGTTCTAGTCAGAGATTCAGGTCACATAATGCTTTCAGATTTTGATCTATCACTCCGCTGTTCAGTGTGTCCAACACTTGTAAAATCATCATCTGCACATGTAAGCAGCAATAACACTTCAGGTAGCATTTTAGATGATGAACATGCAGTACAAGGTTGTATGCAACCATCAAGCTTCTTCCCAAGGATTTTACCTTCAAAAAAGAACCGCAAATCAAAGTCAGATTTTGGCCTCATGGAAGGAGGTCGTCTTCCTGAACTAATGGCAGAGCCTACAAATGTGCGCTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATCCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACATTTGGGATCTTTTTATATGAGCTTTTGCATGGAACAACACCTTTTAAGGGTGCAGGAAACCGTGCCACACTCTTTAATGTTGTAGGACAACCCTTGAAGTTCCCAGATGCTCCTCATGTTAGTCCTGTTGCAAGAGACCTTATTAGAGGGTTGTTGGTGAAAGAACCTCAAAAAAGGTTTGCTTATAAGAGAGGTGCAACAGAGATTAAACAACACCCCTTTTTTGAAGGAGTGAATTGGGCTCTAATTAGAAGTGCTACACCTCCTATTATACCTGAACCTGTAGATTTTTCTCAGTATGCTAGCAAAGAGACAGTGAACACAACAGACAAGAAGATGGCAGACATTACTAGTGATAAAAACATCAATACACAAACTGATTCTTCTTATGAAGAGTTTGAGTATTTTTAG 1701 0.3992 MQMNNNVSEEAHKTDHSCANSSNDHSTSHGRKVNNNQATKDAFTNEQTTNREGHIDQCSKNNAKMASKPASKPQKLESHIRNISEFTTNQRPSPGARMPSNCDPSTTSSGVTTGTARGFAMSSKTTNHGQGSGTSSRSDSLESSSSQHIKPHTGGDVRWDAINKVSRGSNLNLSHFRLLKRVGYGDIGSVYLVELKGTGTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKYNCLIMEFCSSGSLHSLRLKQPNKHFTEEAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDSGHIMLSDFDLSLRCSVCPTLVKSSSAHVSSNNTSGSILDDEHAVQGCMQPSSFFPRILPSKKNRKSKSDFGLMEGGRLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGNRATLFNVVGQPLKFPDAPHVSPVARDLIRGLLVKEPQKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPVDFSQYASKETVNTTDKKMADITSDKNINTQTDSSYEEFEYF. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09465 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Seca3g09465 566 Gene3D Transferase(Phosphotransferase) domain 1 380 523 - -
Seca3g09465 566 MobiDBLite consensus disorder prediction 1 56 - -
Seca3g09465 566 FunFam serine/threonine-protein kinase D6PK-like 260 327 - -
Seca3g09465 566 ProSiteProfiles Protein kinase domain profile. 176 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09465 566 CDD STKc_phototropin_like 174 526 - -
Seca3g09465 566 Pfam Protein kinase domain 177 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09465 566 Pfam Protein kinase domain 381 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09465 566 PANTHER FLIPPASE KINASE 1-RELATED 18 534 - -
Seca3g09465 566 FunFam Serine/threonine-protein kinase D6PK-like 174 259 - -
Seca3g09465 566 MobiDBLite consensus disorder prediction 20 56 - -
Seca3g09465 566 ProSiteProfiles AGC-kinase C-terminal domain profile. 506 566 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca3g09465 566 FunFam Serine/threonine-protein kinase AGC1-7 398 523 - -
Seca3g09465 566 Gene3D Transferase(Phosphotransferase) domain 1 260 327 - -
Seca3g09465 566 Gene3D Phosphorylase Kinase; domain 1 174 259 - -
Seca3g09465 566 SUPERFAMILY Protein kinase-like (PK-like) 173 540 IPR011009 -
Seca3g09465 566 MobiDBLite consensus disorder prediction 86 151 - -
Seca3g09465 566 SMART serkin_6 176 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g09465 566 MobiDBLite consensus disorder prediction 86 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09465 Seca-Chr3 235104050 235107243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09465 55 566 AGC Kinase Gene Family AT1G79250 65.291 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g09465 Pkinase 4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09465 - - gmx:100802478 837.025