Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09442 ATGGCGAAAACGAGGCCAGGGAAAAAGGACATGGACTCATACACCATCAGAGGGACCAACAAGGTCGTCAGAGACACCCCCATGTGGGGGTTGTTGGTTTTGGTTGCAGCTGGAGACTGTGTTCTGATGCGGCCTACGGACACGTCGAAGCCACCCTACGTAGCGCGCGTGGAGAAGATCGAACAAGATAATAGGAGCAACGTGAGGGTACGGGTGAGGTGGTATTATAGGCCTGAAGAGTCGATTGGGGGTCGCAGACAGTTCCATGGTGCTAAAGAGCTTTTCCTCTCTGACCATTACGATGTTCAGAGTGCTCACACCATTGAAGGCAAGTGTATTGTGCATTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCTACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCAGATGACCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGACCATTTTGTGTGTTCTGAATGTTCATCTGATGATGATATAAAGAAACCCCAAACTACATTTTCTGCATCACCAGGAGCTGATAGCAAGGTGGAGTCCAAGCGGCGGAAGAGATGA 687 0.4803 MAKTRPGKKDMDSYTIRGTNKVVRDTPMWGLLVLVAAGDCVLMRPTDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDIKKPQTTFSASPGADSKVESKRRKR. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09442 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 214 IPR013083 -
Seca3g09442 228 ProSiteProfiles Zinc finger PHD-type profile. 150 201 IPR019787 -
Seca3g09442 228 SMART BAH_4 33 148 IPR001025 GO:0003682
Seca3g09442 228 MobiDBLite consensus disorder prediction 199 228 - -
Seca3g09442 228 FunFam Chromatin remodeling protein EBS 1 144 - -
Seca3g09442 228 Pfam BAH domain 34 147 IPR001025 GO:0003682
Seca3g09442 228 PANTHER OS08G0421900 PROTEIN 1 220 - -
Seca3g09442 228 SUPERFAMILY FYVE/PHD zinc finger 144 202 IPR011011 -
Seca3g09442 228 SMART PHD_3 152 199 IPR001965 -
Seca3g09442 228 FunFam Bromo-adjacent homology (BAH) domain-containing protein 145 216 - -
Seca3g09442 228 CDD BAH_BAHCC1 38 168 - -
Seca3g09442 228 Pfam PHD-finger 152 200 IPR019787 -
Seca3g09442 228 ProSiteProfiles BAH domain profile. 33 148 IPR001025 GO:0003682
Seca3g09442 228 Gene3D - 33 144 IPR043151 -
Seca3g09442 228 ProSitePatterns Zinc finger PHD-type signature. 153 198 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09442 Seca-Chr3 234818926 234824300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09442 43 144 Core DNA Replication Machinery Family AT4G14700 29.126 7.59e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g09442 BAH 6.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09442 K25868 - gmx:100800806 432.18