Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09439 ATGGAAAAAATGATTAGGTTTGCTTTTCTGTTTGGGTTTATGAATATAATTTTACTAGGGAATACAACAGCTGATGAGAGTTCTGATGTTAAGGGCATTATAGGAGCTATTTTAGATAGCAGCTCTCGCATTGGCCAAGAGCAAGCAGTGGCTTTGAAAATGGCATTGGAGGACTTTTATCATTACAGCAATCAGAGTTATAATCTTTATATAAGGAATTCTGAAGGGGATCCTCTTCAGGCAGCTCTTGCAGCCAGAGATCTTATTGATAAGCAAAAGGTGCAAGCTATCATTGGACCACAAACATGGGATCAAATGTCTTTAGTGGCTGAAGTCTGCAGCCAAAAGAGCATACCACTCCTTTCTCTAGCAGATGCAACTCCACAATGGGCATTGGAGAAGTGGCACTTCCTGCTGCAAGCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAAATTGTTAAGTCCTGGAAACCATATAAGGTTAGCATAATATATGAAGATGGAGATTCATCATCCCTGGAAGTTTTATCACAGCTCTCAGGAGCTCTCAAAGAAGTTGGCACAGAATTAAGCAATGTTCTATCCATTCCACCTTTAGTTTCCTCTTCATCATTGTCCCAAGAACTTGAGAAGCTAAGAGAAGGGCAATGTGCAGTCTTTATTGTCCATTTGTCTTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAGAAAATGAATATGATGGGGGAAGGTAAGGTATGGATTACTACTGGTACCTTCACAAGCCTTGTCCATTCCATGAATGCCTCCACCATCTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTACATCCTAAATCAGATGCACCAATATGAGAACTTTTACCAAAGGTTTCGTAAAAACTTTGGCTTAGAGAATTTTGAAGAGTTTAATTATGAACCTGGGATCTTTGCAGCTCAGACTTATGATGCTGCATGGACTGTGGCTAAGGCAATGATAGAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTGCACAGTGATTTTACAGGCTTAAGTGGAAAAATTCAGTTCACTGACCATAAAATAGCTCCAGCAAATACTTTTCAGATCATTAATGTGATTGGGAAGAGCTACAGGGAAATTGGGTTCTGGTTAGATGGACATGGTTTCTCAAAAACTTTTGGCCAAAATGATTCTTACAGTCCTTCAGTGAAGGAATTAGGAAGAGTGGTCAATCCAACATGTACTAAACGACTAAGAATTGGTGTACCCTCCACATCAACATTCAAACAGTATGTCAATGTTATTCAAAATAATTCTGAAAATGTTACCTCCTTCAAGGGATTTGCTATAGATCTTTTTAAAGAAGTAGTAAAGGAATTGCCATACCATCTGGAATATGATTTCTTTGCCTTCGATGGCACATATGATGAAATGGTGGAGCAAATTTATTTCAAGACATATGATGCAGTTGTTGGTGATGTAACAATTGTGTCCACACGTTATGAATATGCTTCATTTACTCAGCCCTATACTAATCCAGGAGTGATGATGATTGTTCCTGTTAAATCAAAAGAAGGCAACAAAATGTGGTTATTTATGAAGCCTTTCACCAAGCTCATGTGGATTCTAATATTGGCCATCATTGCCTACAATGGCTTTGTTATTTGGATTATTGAAAGAAACCACCGCCCTGAACTTAAGGGCCCTATTCTGCATCAAACGACAACCATACTGTGGTTGGCTTTCATTTCTCTGTTCTCTTTGAATGGGGACAAGTTACATAGCAACTTATCAAGGGTGGCAATGGTGGTGTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACAGCTAGCCTTGCAAGCATGTTGACTGTTGAACGGTTTGAACCCACTATAGACAGCCTTCAACAACTAAAGAACTCCAATGCCAAGGTAGGATATGATCAAGGATCCTACTTGCAAAGATATCTCCAGGATGCATTGGATTTCAGTGCTGAAAACATCAAGCAATTTGACTCACAGCACGACTATGCTGATGCTCTAGGAAGGAAAGAAATAGCAGCTGCCTTCCTCGATGCTGCTGAGGCCAAAATTTTCCTTACAAAGTACTGCAAAGGGTTTGTTCAAGTTGGACCTACGCACAAAATTGGAGGATATGGATTTGTATTGCTTCAACAATTCTTTTACTTTTCTCTGTATGAATTTCTAGCCCTCAATCACAGCCAAGTTTATGTAAACCCTGTTGCATTGTCTATGCAGGTATTTCCAAAGGGTTCTCCATTGCTTGATGATGTAAACGAAGTTCTACTAAACATATCAGAAAGTGGAACACTACGTGATCTAGAAAACAGTATGCTTGCATCAGAGGAATGCAAAGACACAGAGCCAGGTTCAGAAACTACTAGTCTTAGCCCTTGCAGCTTCTTGGTGCTCTTCATCTTAACTGTAGGCACATCAACAACTGCTCTCTTGATTTACATATTCCATGTGAATTATTTATGCCATGGACACAGAACAGTGTGGAGTCTAATGATGGCTGTGATTAAAAGTTGGGGATCTCAAAAGAGACTATTTTCAAGAAGAGTCCACAATTTTGCAGAATATCCTTTAAACTCTCCCAATATTTCAACTTTAGCTTAA 2652 0.3937 MEKMIRFAFLFGFMNIILLGNTTADESSDVKGIIGAILDSSSRIGQEQAVALKMALEDFYHYSNQSYNLYIRNSEGDPLQAALAARDLIDKQKVQAIIGPQTWDQMSLVAEVCSQKSIPLLSLADATPQWALEKWHFLLQASPSQIMQMKAIAEIVKSWKPYKVSIIYEDGDSSSLEVLSQLSGALKEVGTELSNVLSIPPLVSSSSLSQELEKLREGQCAVFIVHLSFPLALHLFETAKKMNMMGEGKVWITTGTFTSLVHSMNASTISNMQGIIGVKSYILNQMHQYENFYQRFRKNFGLENFEEFNYEPGIFAAQTYDAAWTVAKAMIETNQKGGQLLLDKILHSDFTGLSGKIQFTDHKIAPANTFQIINVIGKSYREIGFWLDGHGFSKTFGQNDSYSPSVKELGRVVNPTCTKRLRIGVPSTSTFKQYVNVIQNNSENVTSFKGFAIDLFKEVVKELPYHLEYDFFAFDGTYDEMVEQIYFKTYDAVVGDVTIVSTRYEYASFTQPYTNPGVMMIVPVKSKEGNKMWLFMKPFTKLMWILILAIIAYNGFVIWIIERNHRPELKGPILHQTTTILWLAFISLFSLNGDKLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVERFEPTIDSLQQLKNSNAKVGYDQGSYLQRYLQDALDFSAENIKQFDSQHDYADALGRKEIAAAFLDAAEAKIFLTKYCKGFVQVGPTHKIGGYGFVLLQQFFYFSLYEFLALNHSQVYVNPVALSMQVFPKGSPLLDDVNEVLLNISESGTLRDLENSMLASEECKDTEPGSETTSLSPCSFLVLFILTVGTSTTALLIYIFHVNYLCHGHRTVWSLMMAVIKSWGSQKRLFSRRVHNFAEYPLNSPNISTLA. 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09439 883 PIRSF IGluLR_plant 757 865 IPR017103 -
Seca3g09439 883 PIRSF IGluLR_plant 1 730 IPR017103 -
Seca3g09439 883 SUPERFAMILY Periplasmic binding protein-like I 34 387 IPR028082 -
Seca3g09439 883 SMART GluR_14 420 792 IPR001320 GO:0015276|GO:0016020
Seca3g09439 883 Gene3D - 35 367 - -
Seca3g09439 883 CDD PBP1_GABAb_receptor_plant 34 396 IPR044440 -
Seca3g09439 883 FunFam Glutamate receptor 532 670 - -
Seca3g09439 883 CDD GluR_Plant 419 790 - -
Seca3g09439 883 Pfam Ligand-gated ion channel 788 821 IPR001320 GO:0015276|GO:0016020
Seca3g09439 883 Gene3D - 144 386 - -
Seca3g09439 883 SUPERFAMILY Periplasmic binding protein-like II 418 727 - -
Seca3g09439 883 Pfam Receptor family ligand binding region 50 376 IPR001828 -
Seca3g09439 883 FunFam Glutamate receptor 416 531 - -
Seca3g09439 883 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 836 IPR015683 -
Seca3g09439 883 Pfam Bacterial extracellular solute-binding proteins, family 3 447 787 IPR001638 -
Seca3g09439 883 Gene3D - 531 662 - -
Seca3g09439 883 FunFam Glutamate receptor 148 310 - -
Seca3g09439 883 Gene3D - 413 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09439 Seca-Chr3 234735928 234741735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09439 9 845 Ion Channels AT2G29120 30.159 4.37e-123 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09439 - - gmx:100776939 1258.82