Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09438 ATGGAAAAAATGCATAGGTTTGCTTTTCTGTTAGGCTTTATCAACATACAGATAATTTTAATAGGGAACACAGCAGCTGATAAGAGTTCTGATGTTAAGGGCATAATAGGAGCTATTTTAGATTGCAGTTCTCGTATTGGCCAAGAGCAGGCAGTGGCTATGAAGATGACATTGGAGGACTTTTATCATTACAGCAATCAGAGTTTTTCTCTGTACATAAGGAACTCTGAAGGGGATCCTCTTCAGGCAGCTCTTGCAGCTAGAGATCTTATTGATAAGCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGAAGAGACATCTCTAGTGGCTGACATCTGCAGCCAGAAGAGCATACCACTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCAATGGAGAAGTGGCACTTCCTGCTGCAAGCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAAATTGTTAAATCTTGGAAATCATATAATGTTAGCATAATATATGAAGATGGAGACTCATCATCCCTGGAAGTTTTATCTCAACTCTCTGGAGCTCTCAAAGAAGTTGGCACAGAATTAATCAATATTCTAGCTGTCCCACCTCTAATTTCCTCTTCATTGTCCCAAAAACTTGAGAAGTTAAGAGAAGGGCACTGTAGAGTCTTTATTGTCCATTTGTCCCTTCCTTTGGCACTACACCTGTTTGAAACTGCAAACAAAATGAATATGATGGAGGAAGGTAATGTATGGATTACTACTAGTACCTTCACAAACCTTGTTCATTCCTTGAATGCCCCCACTATCTCCAATATCCAAGGGATTATTGGAGTCAAGAGCTACATCCGAAATCAATCGCACCAATATGAGAATTTTTACCATAGATTTCGCAAAAAGTTTAGCTCACAGCATTTTGAAGAGTTTAATTATGAACCTGGGATCTTTGCAGCCTATGCTCATGATGCTGCACGGACTGTGGCTCAGGCAATGAGGGAAACCAACCAAACAGGGGGTCCAGTTTTGCTAGATAAGATTTTGATTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCAATGACCATAAAATAGCCCCAGCACATACTTTTCAGATCATTGATGTGATTGGGAAGAGCTACAGGGAAATTGGATTCTGGTCAGATGGACTTGGTTTCTCAAAAACTTACGGCAGAAATGCTTCTTACAGTTCTTCTGTGAAGGAATTGGGAAAAGTGGTTAATCCAATATGTGCTAAACGACTAAGAATTGGTGTCCCCTCTTATGCAACATTCAAACCATATGTCGATGTTATTCAAGATGACTCTCAAAGTGCTCCCTCCTTCAAGGGAATTGCTATAGATCTTTTCAAAGAAATAGTAAAACAATTACCATACCATTTGGAATATGATTTCTTTGCCTTCAATGGCACACATGATGAATTGGTGAAGCAAATTTATTGGAAGAAATATGATGCAGCTGTTGGTGATGTAACAATAGAGTCCGCGCGTTATGAATACGCTTCATTCACCCAGCCCTATACTGATCCAGGAATGGTGATGATTGTTCCTGTTCAATCAGAAACAGGCAACAGAGCGTGGTTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATTTTGGTCATCATTATCTACAATGGCTTTGTTGTATGGATGATCGAAAGAAACCACCGCCCGGAACTTAGAGGTCCTATTCTGCATCAAACGATAACTGTACTGTGGTTGGCTTTCATTTCTCTGTTCTCTCTTAATGGTGACAAGTTACGTAGCAATTTGTCGAGGGTGGCAATGGTGGTTTGGCTATTTGTGGCTCTAATCATTACACAGACTTACACAGCTAGCCTTACAAGCATGTTGACTGTTGAACGGTTTGAACCCACTGTAGACAGCATTCAACAACTACAAAACAGTAATGCCATGGTAGGATGTTACGGGGGAACCTACATGAAAAGATATATCCAGGAGGCATTGGACTTCAATGCAGAAAACATCAAGCAATATGACTCACCACAAAACTACAATGACGCTCTAAGAAAGAAAGAAATAGCAGCTGCCTTCTTTGATGCTCCTGCTGCGAAATTCTTCCTTGCAAAGAACTGTAAAGAGTTTGTCCAAGCTGGGCCTACGTACAAAATTGGAGGATATGCATTTGTATTGCTTCAACAATTCTTTCACTTTTCTCTTGTATGA 2217 0.4023 MEKMHRFAFLLGFINIQIILIGNTAADKSSDVKGIIGAILDCSSRIGQEQAVAMKMTLEDFYHYSNQSFSLYIRNSEGDPLQAALAARDLIDKQKVQAIIGPQTWEETSLVADICSQKSIPLLSLADATPEWAMEKWHFLLQASPSQIMQMKAIAEIVKSWKSYNVSIIYEDGDSSSLEVLSQLSGALKEVGTELINILAVPPLISSSLSQKLEKLREGHCRVFIVHLSLPLALHLFETANKMNMMEEGNVWITTSTFTNLVHSLNAPTISNIQGIIGVKSYIRNQSHQYENFYHRFRKKFSSQHFEEFNYEPGIFAAYAHDAARTVAQAMRETNQTGGPVLLDKILISNFTGLSGKIQFNDHKIAPAHTFQIIDVIGKSYREIGFWSDGLGFSKTYGRNASYSSSVKELGKVVNPICAKRLRIGVPSYATFKPYVDVIQDDSQSAPSFKGIAIDLFKEIVKQLPYHLEYDFFAFNGTHDELVKQIYWKKYDAAVGDVTIESARYEYASFTQPYTDPGMVMIVPVQSETGNRAWLFMKPFTKLMWILILVIIIYNGFVVWMIERNHRPELRGPILHQTITVLWLAFISLFSLNGDKLRSNLSRVAMVVWLFVALIITQTYTASLTSMLTVERFEPTVDSIQQLQNSNAMVGCYGGTYMKRYIQEALDFNAENIKQYDSPQNYNDALRKKEIAAAFFDAPAAKFFLAKNCKEFVQAGPTYKIGGYAFVLLQQFFHFSLV. 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09438 738 Gene3D - 429 534 - -
Seca3g09438 738 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 728 IPR015683 -
Seca3g09438 738 FunFam Glutamate receptor 418 532 - -
Seca3g09438 738 Gene3D - 535 676 - -
Seca3g09438 738 Pfam Bacterial extracellular solute-binding proteins, family 3 447 727 IPR001638 -
Seca3g09438 738 SUPERFAMILY Periplasmic binding protein-like II 419 728 - -
Seca3g09438 738 Gene3D - 36 368 - -
Seca3g09438 738 Pfam Receptor family ligand binding region 52 377 IPR001828 -
Seca3g09438 738 CDD PBP1_GABAb_receptor_plant 36 395 IPR044440 -
Seca3g09438 738 FunFam Glutamate receptor 533 671 - -
Seca3g09438 738 Gene3D - 146 388 - -
Seca3g09438 738 FunFam Glutamate receptor 150 311 - -
Seca3g09438 738 SMART GluR_14 423 734 IPR001320 GO:0015276|GO:0016020
Seca3g09438 738 Pfam Ligand-gated ion channel 544 685 IPR001320 GO:0015276|GO:0016020
Seca3g09438 738 SUPERFAMILY Periplasmic binding protein-like I 35 389 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09438 Seca-Chr3 234717115 234722154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09438 9 728 Ion Channels AT2G29120 29.673 2.39e-111 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09438 - - gmx:100776939 1105.12