Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09434 ATGGATGAAATGACTGGTTTGCACACCTATCAGCAATGGAATGGCTATTTTCATTCTGAAAGTAACCATTTCAGAGGTCAGCCTAGTGTCAACAGAGCTCATAGAAGGAAAAGAGCTACCCCTGGTGCTATAAACATTGATGGCATACTTTTGATGGATAGTCCATCAATTTCCATGTATAGAGGAAATGGGGTCCCTTCACCTGTGGAAGTTGGACCACATGGTAGTTCATGGAGCAGATCAGGTGAGTCTATGATGGTGCATGGCCATAACCATTTGATCAGAGGAAACTATTTAGGCCAGCATTTTCAGCCAGATGCTTCTCCATGGCAAGACCAACAGTTGAATAGTAATATCAATGATAGTCATGCTATAGCTTGGAACCAGTATCTTCCGATGGCCTATGTACAAGCAACCAATGTTAATGAAAGTTCATCAGGGAATTCAAGTATGGGTCTGCTGAGATATCATGAAGCAGCTGGCAGCAGAAGAGGCCTCAGGTTTCCTCATCCTCCTCCTGTCAACCCACGGCACCATAACTTTCATCATCTACCACTGGCTGTGCAAGGGGTGAGAGGTCACTCTATCAACTTTCATCCTTCAGTAGCTGCAGCTTCATATAGAGTTCCAACAAATCCATCACGCAGTGCTGCAATCCCTAGACAGAATGGTTTTGAGATGGGTGCTAGTTATGTTGGCCTTGCACCACCTGCAGGTCCTCGGTCATACAGAACTCTTGGTCGTCAACATCAAAATCTTCCTCCCATTATTCAAGTTGATGATGTTGCATTACTGGTTGACCATCACACTGACATGTCTTATGAGGCAAGTAGACAAATTGGCAATGTAAGCACAAGTTTAACAGAGGAAATGGTTATGAATCAAATGAAGACAAAGACTGTTAATTTGGAGGAGGCAGGTTCTGAGGAACAAGAAGCTGATTCTTGTGTAATATGCCAGGATGAATATAAGAATGGAGAGAAAATTGGAATTCTTCGATGTGGGCACGAATATCATGCAGATTGTTTAAGGCAATGGATACTTGTGAAAAATGTCTGCCCCTTATGCAAATCACAATCATTGACTCCTTGA 1092 0.4286 MDEMTGLHTYQQWNGYFHSESNHFRGQPSVNRAHRRKRATPGAINIDGILLMDSPSISMYRGNGVPSPVEVGPHGSSWSRSGESMMVHGHNHLIRGNYLGQHFQPDASPWQDQQLNSNINDSHAIAWNQYLPMAYVQATNVNESSSGNSSMGLLRYHEAAGSRRGLRFPHPPPVNPRHHNFHHLPLAVQGVRGHSINFHPSVAAASYRVPTNPSRSAAIPRQNGFEMGASYVGLAPPAGPRSYRTLGRQHQNLPPIIQVDDVALLVDHHTDMSYEASRQIGNVSTSLTEEMVMNQMKTKTVNLEEAGSEEQEADSCVICQDEYKNGEKIGILRCGHEYHADCLRQWILVKNVCPLCKSQSLTP. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09434 363 CDD RING-H2_RNF24-like 314 359 - -
Seca3g09434 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 361 IPR013083 -
Seca3g09434 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 59 359 IPR045191 GO:0061630
Seca3g09434 363 SUPERFAMILY RING/U-box 308 360 - -
Seca3g09434 363 SMART ring_2 316 356 IPR001841 -
Seca3g09434 363 Pfam Ring finger domain 314 357 IPR001841 -
Seca3g09434 363 ProSiteProfiles Zinc finger RING-type profile. 316 357 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09434 Seca-Chr3 234689094 234690905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09434 261 361 C3H Transcription Factor Family AT2G15530 42.056 4.42e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09434 K19041 - gmx:100779069 367.851