Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09433 ATGCTCCCTGCTCATTTTGTAACCTTTTTTCTTTTCTTTTTTTTTTATCATCAACATCGTACTCATACCCGTCACCTGCCCTTCTCTCTCTCCTCTTCGCAGCACAACCAAGGTTTCAAATTTAACCTTTCCTTCAATCCAAACGCTCCCTCCTTCTTTTGCACTCCCTTCTCTTCCAAACACAACATTCTCTCTTCTCTCACGTTTCTGGGATTCCTTCTTCCTTTGTTCATGGGTCGCCCGCCCAGTAATGGAGGCCCCGCCTTCCGCTTCACTCAGAATGAGGTAGGAGAAATGGAAGCTATTCTCCAGGAACACAACAATGCAATGCCAGCACGTGATGTTCTTGCAGCTCTTGCAGATAAGTTCAGTGAATCACCAGACCGTAAAGGCAAGATTACAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCAATAAGGGCAAAATCAAGTAAGACTCCTGGAAAGTTAAATATTACACCAATGCCTCGGGATGATTCAGCCCCAGTAAGGAATATGCCTCAACCAGCAGCTGCTCCAACAGCTGCTCCAATTCCTGCTGCTTCAGGTTCAGGTAGAATGTTGCTGCTTTTAGGTGCTTAG 618 0.4515 MLPAHFVTFFLFFFFYHQHRTHTRHLPFSLSSSQHNQGFKFNLSFNPNAPSFFCTPFSSKHNILSSLTFLGFLLPLFMGRPPSNGGPAFRFTQNEVGEMEAILQEHNNAMPARDVLAALADKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDSAPVRNMPQPAAAPTAAPIPAASGSGRMLLLLGA. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09433 205 ProSiteProfiles 'Homeobox' domain profile. 90 154 IPR001356 GO:0003677
Seca3g09433 205 CDD homeodomain 90 152 IPR001356 GO:0003677
Seca3g09433 205 Gene3D - 87 161 - -
Seca3g09433 205 MobiDBLite consensus disorder prediction 156 190 - -
Seca3g09433 205 SUPERFAMILY Homeodomain-like 80 153 IPR009057 -
Seca3g09433 205 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 78 178 IPR039276 -
Seca3g09433 205 SMART HOX_1 84 158 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09433 Seca-Chr3 234653568 234657620 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g09433 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09433 - - pvu:PHAVU_011G158200g 203.371