Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09430 ATGCGATTATCGCGCGAATCTGGTTCGTCATTGGAGCAGAAGAAGGCTGGTCGATCGGGTTTGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACAATCGAAACCATGGTGAATTGAATGAGGGTACTTCTGTTGGTGATGATGATGGTGGTGATGCCGGGGTTCGCCGTAGCTCTAGGGTTCGGCGTGTCCCGGTTATGCTCGATGCCTCTCCCACTCCCTCAAAGAAGCGGCGGAGGCTGAGCAAGAATGGAGTGTTGAAGGATGTAAAGGATGCCAAGAATGTAGAACGGTTGACCGGGAGTTCTGGTGGCGCAGAGGCTTCGAGAGTTTGGAGTTCAAGGTTGAGATCGAGGGTTGGAAGTGTAGGTTCTAAGGTGAAGGAGGAGAAGGAACCTCGCAGTGGGAAGAGGAAGCTGTTTGAGGATGATGTTAGAAGTAGGGTTGATGAGGAGGTGGAGGTTAGGGAGGTGGATAATAAAGAGGAATTGGAAGGTGGGATGCCAACAATAGTTAAGTCAAAGAGACCAGGGAGGATCAAAGCTAAGAAGCGTGAAGAGGGACATGAAGATAAAGAGAATGAGGTTCATGAGAATTTAGATGAGACTAAGAGTCAAGAAGTGGAGCTTACATTGAACAAAGATGAGGAGAGTGCTTCAGTTTTGGAAGAAACCCAGTTGTCTGGTGGGAGTGGGAATCAGGTAGAAGTATTGGATGAGAATGCCCCTATAACAACAGGGAATCAAGAGGGAGACCTATCTAACAATGTGCAAACAGAGGAGTGTAATGGCAGTATTGAACTTTCTACAGTGGAACTTGTAGATAAACAGGATGATCAATTAGAGTCTGCAAAGGAAGGCAAAAATGCAAGTGATGTTGCAGAAGCTGCTGAAATTTTGACAGAACACAGAGAAAATGAAGAATCTGTTGATAAGGAGCTTGACATTGATGAAAAAACCTTGCAAGATGCAAATGCTGTGGGGATGAATGAGTCCAAACAAGCTTCAAATGATAAGCCTCGCCATCAACGTATTAAAGAGGGTAGGCGGTGTGGTTTGTGTGGTGGAGGGACTGATGGTAAACCTCCTAAAAGATTAGTTCAGGATAATGGTGAGAGTGAGAATGAGGCATATAGTGGGTCTTCAGCTTCAGAGGAACCTAATTATGATATCTGGGATGGCTTTGGCAATGAACCTGGATGGTTGGGGCGCCTCTTGGGTCCTATTGATGATCGCTATGGTATTGCTCGAATATGGGTTCATCAGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTTAGGGCTGCACTTTGTAGAGGAAGAGCATTGAAATGCACACGTTGTGGGAGGCGAGGAGCTACCATTGGTTGTCGTGTTGATCGCTGTCCAAAAACATATCACTTGGCATGTGCAAGGGCAAATGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCATGCACAGATCATCGGCATCTCTTCCAACCTCATGGTAATAAATATTTAGACCAGATAAAGAAGTTGAAGGCTAGGAAAATGAAGTTGGAGGTGAGGAAGCTTTCAAATGATGCATGGAAAAAGGACATTGAAGCAGAAGAGAGATGGCTGGAAAATTGTGGTGAGGATGAAGAATTTTTGAAACGTGAAAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCTGTATACATCGGTGGTTCAGACTCTTCCAATGAAAAATCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCAGTGTATGAAGGAAGTTGTTATTTTACCTCTACTATATCCTGAGTTCTTTGATAGTTTAGGGCTTACACCTCCAAGAGGTGTTCTGTTGCATGGGTACCCTGGAACTGGGAAAACCCTAGTGGTCCGAGCACTGATAGGTGCATGTGCTTCTGGTGATAAACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATACGTAGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAGATGCCAGCCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCTGTCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCAACCTTACTTGCTCTTTTAGATGGTTTAAAATCCAGGGGTTCAGTTGTAGTCATAGGTGCAACAAATCGTCCTGATGCTGTTGATCCAGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTATTTTCCATTGCCATCAATTAAGGACAGAGCTGCTATTCTATCACTTCACACAAAGAGGTGGCCGAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGCAAAACTCCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTATGTACTCAAGCGGCAATCAATGCTTTGAAGAGGAATTTTCCTTTGCAAGAAGTGCTGTCTGCAGCTCAAGAGAAAGATTCTGGTTGCAAGAACCCTTCTCTTCCGTCCTTTGCGGTGGAGGAGAGGGATTGGTTGGAGGCTTTATCATGTTCCCCACCACCATGCTCCCGGAGAGAAGCTGGAAATGCTGCTAATGATGTAATATGCTCCCCTCTTCCCGTCCACCTTATTCCATGTTTGTTGCGTCCATTATGCACTCTTCTCTTATCTCTTTTTCTTGATGAACGCCTATGGTTGCCACCTCCTATAACAAGAGCTGTAACAATGATTAAAAATGTGATGATTTCTGCTTTAGACAAAAAGAAAATTCCTATTGATCATTGGTGGTTGCATGTTGATAAGTTTCTTCAAGAAGCAAATATTGCTGCAGAGCTAGAGAGGAAGCTTACTTGTTCTGGCATTTTGTCTGCGAATGATGGTTTTGCTGGTTCTCTTGATGTTGTGGATGATACTGATGACAACAGGGTGAATTTTGCACCCTCTATAAGGAACCATGTTGGCATGCGCAGTGGTTTGTCATTTGCATTGCCTAACAAATCAGGATTTCGTATATTGATTGCGGGAAATCCCAGATCTGGCCATAGACATCTTGCATCTTGCCTTCTTTCCTGCTTTATTGGGAATATTGAAATTCAGAAGATTGATATGGCAACTATTTGTCAAGAAGGACACGGAGATGTAGTACAAGGGATCGCGCAAATATTAAGTATTTTTCTCTGTCCTAATTTTGTTGTTAGCTTTTTAATTGTTGGTCATAGATGCGTCATGCCAGTTTGGATATTTATCACCATGAAATGTGCTTGTGTGCAATCATCTGTAGTATTCATGCCGAGAATAGATTTGTGGGCTGTAGAGACACATTTCCAAATTTCTAAAACCACCGACTCCTGCTCAACAAATCATCTATCTCCCGAGATGGAGAAGTCTTGTTTCAAACCAAGCCAAGTTGCTGAGAAGGAAACCGTGTGCAATGCAGAGGAAAACAAGTCAGCAGAAGCCGAAAGCCAAGCCGGCAGAAGGGCTTCACAGGCCTGGATGTCATTCATTGAGCAGGTGGAGTCCATTGGTGCATCCACATCATTGATGATTCTGGCTACCTCAGAAGTTCCTTATACTGAACTTCCATGTAAAATAAGGGATTTCTTCAAGACTTACCCATCAAAATGTGACGAATCAGCTCCTTTGGAGCAGACAGTTCCTCATTTCTCTCTGCATATTGATGGGAAATTTGATCAGGAGGTGGTGATCAATCAATCTGCAGTAGAGCTATTGAGAAATTTAGTTGAGCAGCAGATTCAATTGATTCATCAGGGATCTCACATTCATATGAATGCCCAAAGGAGGTACAGAACCAATGGTTCAATTGAAGCTTGCAGAGATACGGTACTTCAGAGAAACAATAATGGATTAGCCAATGAGAAGAAAGGTAAAATTCAACTTCCTGAATCTTTTACGAAAGTTCCAGGACCACCCAACAGTAGGTTACTGAAGGGAAAGTCAACCCTGCAGTTGGCAATATCCACATTTGGCTATCAAATTCTTCGATACCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGAGGGTCCTTGTGCTGATGTAAGTGGACCTTGGAAGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAGTAATTCACAAGACAAGGTTTTTAGTACCTCTAGTGGCATAAAAAGCAAAGAAAGATCTGGTTTAGTTAGAGGCTTGGTTGCTGTTGGTTTATCAGCTTATAGAGGTGCTTACACATCTGTTAGGGAAGTTTCCCTTGAGGTACGGAATGTTCTTGAGATCTTGGTTGGGCAAGTCAATACAAAAATTCAAGCTGGGAAGGACAGATATCAATATCTTCGTATTTTATCGCAAGTTGCTTATCTGGAAGATATGGTCAATAACTGGGCTTATGCATTGCTGAGTCTAGAACAGGATTCCCCAGAGCTTGTGACAAAGGTTAAGCTGGGAAGTGTAGGGTCATTGAACAGCCATCTAACATGTGAGGATCACCAAGCTGAAGGTGTGGATTGCCATTTGGCTGTTCCTATGAACAGTGGTGGTTTGGATACACAGCAGAGGAATTGTGAGGGAATTCCTGCTGAAACAACTGGATGTCTTGACTTGAATGACAGAAATGATGATTTAAATAACCTTCACCACGATGGTAGCAATGCAAGTTCTAAAGGATCTCTTCAAAACCATTCCTTTTCAGATAAGCATATTAACAACTCTTCTGCTGCAAACCCACCTGTAGATCCATCCATAGATCAGGAAAATGGGACATCATCATTAACTTCTGAAAAACTTGCAGTGGTGAGTGGAGAACTTGGGTCTGTGAAAGACTTGAATGAATCTTCACTCACTCCCTCTGCTCCCCTTTGTGAAAATGGAGAATGTGGATTTTCAAAAGACTTGAATAAATCTACACTCACTGACTCTGTTATCCTTTCTGAAAATGGACTTGATAGTGCCTGTGAACCAGAGGGTGTTAAGATTGGTGACTCCAGGACAGTCTCTAATCCGTCCCTCAGCTTGGCCTCAGTAGAGACTGGCGTTAAACTTAGTGATGATAACCCCGGCAAAGATGAGATTCACGATAATGCTTTAGACACTAATGTCCCTTCAAGCAAGGATAGTGCCTGTGAACCAGAAGGTGTTAAGGTTGGTGACTCCAGGACAGTCTCTAATCCGTCTCTCAGCTTGTCCTCAGCAGAGACTGGTGTTAAACATAGTGATAATAACCCTGGTAAAGATGAGAATGCTTTAGACACTAATGTCCCTTCAAGCAAGGACAGTGGTCCTACTGAATCTGAGGTTATTTGTTTGTATCAATGTTGCCCTCAATGTCTACACATTCTCTATAATTTGACCAAGAAATTACTTGTTCATGAATGTGGGTTGAATAATAACCATTGGACAGTGGAAGATGTCCATGATGCTGTGGTATCACTATCTGTGGATCTTATTTCAGCACTCAGAAAATTTTATCTGGCCGAAGATTTCACTGATTTATCTGATAAAACCTTGAGGCATGAAAAGCATGGAGCATCACTTGACTGTTCAAACCTGAAGACTTGTAATCCCAGAAACGCAGGAGTGCCAGCTGAATGTATTTCTCACTCAACAAGCCTTCATACAGCTGCAAGCAAAGATATGGCATTGAATGAACCACTGGAGCTTCATTTTAATTTTGTTTTCCGAGATGGTGTACTTATTCATATGAACCCAGATGAGGATGTGTCTCTTCACTGTAAATTTGAGACCTTTTGCCTCTGTTCTGTTATAGAGTTAATAGTAATGACAAAGCGCCCTTGTGATTGA 5835 0.4291 MRLSRESGSSLEQKKAGRSGLRLRKKHKRLDAICEEEYNRNHGELNEGTSVGDDDGGDAGVRRSSRVRRVPVMLDASPTPSKKRRRLSKNGVLKDVKDAKNVERLTGSSGGAEASRVWSSRLRSRVGSVGSKVKEEKEPRSGKRKLFEDDVRSRVDEEVEVREVDNKEELEGGMPTIVKSKRPGRIKAKKREEGHEDKENEVHENLDETKSQEVELTLNKDEESASVLEETQLSGGSGNQVEVLDENAPITTGNQEGDLSNNVQTEECNGSIELSTVELVDKQDDQLESAKEGKNASDVAEAAEILTEHRENEESVDKELDIDEKTLQDANAVGMNESKQASNDKPRHQRIKEGRRCGLCGGGTDGKPPKRLVQDNGESENEAYSGSSASEEPNYDIWDGFGNEPGWLGRLLGPIDDRYGIARIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLACARANGCIFDHRKFLIACTDHRHLFQPHGNKYLDQIKKLKARKMKLEVRKLSNDAWKKDIEAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSSNEKSFQGWESVAGLKDVIQCMKEVVILPLLYPEFFDSLGLTPPRGVLLHGYPGTGKTLVVRALIGACASGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPVRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSIKDRAAILSLHTKRWPKPITGSLLEWIASKTPGFAGADLQALCTQAAINALKRNFPLQEVLSAAQEKDSGCKNPSLPSFAVEERDWLEALSCSPPPCSRREAGNAANDVICSPLPVHLIPCLLRPLCTLLLSLFLDERLWLPPPITRAVTMIKNVMISALDKKKIPIDHWWLHVDKFLQEANIAAELERKLTCSGILSANDGFAGSLDVVDDTDDNRVNFAPSIRNHVGMRSGLSFALPNKSGFRILIAGNPRSGHRHLASCLLSCFIGNIEIQKIDMATICQEGHGDVVQGIAQILSIFLCPNFVVSFLIVGHRCVMPVWIFITMKCACVQSSVVFMPRIDLWAVETHFQISKTTDSCSTNHLSPEMEKSCFKPSQVAEKETVCNAEENKSAEAESQAGRRASQAWMSFIEQVESIGASTSLMILATSEVPYTELPCKIRDFFKTYPSKCDESAPLEQTVPHFSLHIDGKFDQEVVINQSAVELLRNLVEQQIQLIHQGSHIHMNAQRRYRTNGSIEACRDTVLQRNNNGLANEKKGKIQLPESFTKVPGPPNSRLLKGKSTLQLAISTFGYQILRYPHFAELCWVTSKLKEGPCADVSGPWKGWPFNSCIIRPSNSQDKVFSTSSGIKSKERSGLVRGLVAVGLSAYRGAYTSVREVSLEVRNVLEILVGQVNTKIQAGKDRYQYLRILSQVAYLEDMVNNWAYALLSLEQDSPELVTKVKLGSVGSLNSHLTCEDHQAEGVDCHLAVPMNSGGLDTQQRNCEGIPAETTGCLDLNDRNDDLNNLHHDGSNASSKGSLQNHSFSDKHINNSSAANPPVDPSIDQENGTSSLTSEKLAVVSGELGSVKDLNESSLTPSAPLCENGECGFSKDLNKSTLTDSVILSENGLDSACEPEGVKIGDSRTVSNPSLSLASVETGVKLSDDNPGKDEIHDNALDTNVPSSKDSACEPEGVKVGDSRTVSNPSLSLSSAETGVKHSDNNPGKDENALDTNVPSSKDSGPTESEVICLYQCCPQCLHILYNLTKKLLVHECGLNNNHWTVEDVHDAVVSLSVDLISALRKFYLAEDFTDLSDKTLRHEKHGASLDCSNLKTCNPRNAGVPAECISHSTSLHTAASKDMALNEPLELHFNFVFRDGVLIHMNPDEDVSLHCKFETFCLCSVIELIVMTKRPCD. 1945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09430 1944 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 768 860 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 284 321 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 128 153 - -
Seca3g09430 1944 Coils Coil 1147 1167 - -
Seca3g09430 1944 Pfam AAA+ lid domain 793 825 IPR041569 -
Seca3g09430 1944 Gene3D - 768 860 - -
Seca3g09430 1944 PANTHER AAA DOMAIN-CONTAINING 15 1845 IPR045199 -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 1729 1748 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 166 262 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 39 153 - -
Seca3g09430 1944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 825 IPR027417 -
Seca3g09430 1944 SMART AAA_5 628 769 IPR003593 GO:0016887
Seca3g09430 1944 MobiDBLite consensus disorder prediction 1557 1601 - -
Seca3g09430 1944 Pfam ATPase family associated with various cellular activities (AAA) 632 767 IPR003959 GO:0005524|GO:0016887
Seca3g09430 1944 Gene3D - 593 868 IPR027417 -
Seca3g09430 1944 FunFam ATPase family, AAA domain-containing 2 591 774 - -
Seca3g09430 1944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 508 IPR013083 -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 1687 1769 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 187 227 - -
Seca3g09430 1944 ProSiteProfiles Extended PHD (ePHD) domain profile. 386 506 IPR034732 -
Seca3g09430 1944 Pfam PHD-like zinc-binding domain 427 506 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 228 262 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 356 391 - -
Seca3g09430 1944 MobiDBLite consensus disorder prediction 1554 1601 - -
Seca3g09430 1944 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 352 508 - -
Seca3g09430 1944 ProSitePatterns AAA-protein family signature. 737 755 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09430 Seca-Chr3 234621861 234633236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09430 594 829 Calmodulin-binding Proteins AT3G56690 42.017 6.21e-47 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09430 - - lja:Lj3g3v0428950.2 2642.07