Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09428 ATGATGTTCTCCTTCAAGACCCAAGAGCACCGAGCAAAACACAACAAGAGGCTAACTGAAGACCAAGTGGCCATCCTAGAGAATTGCTTTGCCTCTAACAAGAAGCTTGAACCAAAGCAGAAATTCCAGCTGGCAAACCAACTTGGTGTCCCTCCAAGACAGATTGCTATTTGGTACCAAAACAAACGAGCTCGCTGGAAGACACAGACCCTTGAGCATGACTACAATGCTCTTCAATCAAGGCTAGAGAATGTGATGGCTGAAAAGAAGCAACTAGAGAGAGATGTGGAATGCCTCAAGGTAGAGCTGAAAAAGGCTCAAGAGATGATGCTTATAAGCATGAAAGGCAATGCTTCTTCTTGTGAATTTTCAACATCTTTTGAAGAGGGATCAGGAGGGATGCATGATGATGAGGAGCTTTATGCTTACTTCATGGCTGCAAACGGGTCCAGTAATTTGCACTGA 465 0.443 MMFSFKTQEHRAKHNKRLTEDQVAILENCFASNKKLEPKQKFQLANQLGVPPRQIAIWYQNKRARWKTQTLEHDYNALQSRLENVMAEKKQLERDVECLKVELKKAQEMMLISMKGNASSCEFSTSFEEGSGGMHDDEELYAYFMAANGSSNLH. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09428 154 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
Seca3g09428 154 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 125 IPR045224 GO:0003700
Seca3g09428 154 SMART HOX_1 12 73 IPR001356 GO:0003677
Seca3g09428 154 ProSitePatterns 'Homeobox' domain signature. 44 67 IPR017970 GO:0000981|GO:0006355
Seca3g09428 154 Pfam Homeodomain 16 67 IPR001356 GO:0003677
Seca3g09428 154 CDD homeodomain 13 69 IPR001356 GO:0003677
Seca3g09428 154 SUPERFAMILY Homeodomain-like 11 79 IPR009057 -
Seca3g09428 154 Gene3D - 8 75 - -
Seca3g09428 154 Coils Coil 68 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09428 Seca-Chr3 234606235 234606699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09428 16 152 Homeobox Transcription Factor Family AT5G53980 46.528 1.46e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g09428 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09428 - - gmx:100781030 206.453