Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09420 ATGGATAACTACTACCATCACCACCACCACTTTAACAATAACAATAGTGGTGATATAAATCTACCTCCTGGGTTTCGTTTCCATCCCACTGATGAGGAACTTATCACATACTACCTCCTCAAGAAGGTTCTCGACAACACCTTCTCAGCTGGCAGAGCTATAGTTGAAGTGGACCTTAACAAGTGCGAGCCATGGGAACTTCCTGCAGAGAAAGCAAAGATGGGTGAAAAAGAGTGGTACTTCTTTAGCCTACGTGACCGAAAGTACCCAACTGGATTACGTACTAATAGGGCCACAGAAGCTGGTTATTGGAAAGCCACTGGCAAAGACAGAGAGATTTATAGCTCCAAAACTTGCTCCCTTGTAGGCATGAAGAAAACCTTAGTTTTCTATAGAGGCAGAGCTCCCAAAGGAGAAAAGAGCAACTGGGTCATGCATGAATATCGTCTTGATGGCAAATTTGCTTATCATTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTCATATCACGTGTGTTTCAAAAGAACAACACAAGTGGTGGTGGCTCCACCGTGTCAGCCACCACCACCGCTTCAAAAAAGACAATGAGAACCAGTACTTCATCTACTACCATGAGCCTCTGCCCTGAACCAGGCTCACCTTCTTCCATTTACCTTCCACCGCTTCTAGAATCTTCTCCCTACACTCCAACCACCGCCACTTCCTCCGCCGCCGCATATAACGACCGTGAGAGCTGCTCCTTTGACAGCGCCACCGTTCAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGCCGTTGCCGCTGATAACTTCGCCAACGCCGGCTTTGACTTTGCTCCGCCGCAGCAGCAGCCACCTCAGCTCGCCGTGGATCCTTTCTCTCGGTTCCAGAGGAACGTTGTTGGTGTGTCTGCCTTCCCCAGCCTGAGATCGTTGCAAGAGAATCTTCAGTTGCCGTTCTTTTTCTCACCGGCGGCGGCGCAGCCTGTGCATGGTGACGTGGCAGGTTGGCCGGTGCCGGATGAGCATAGGGTGGCTGACGGTGGTTCCGGTATGGCATTGGGAGCTTCCGAGCTTGATTGCATGTGGGGCTTTTGA 1101 0.505 MDNYYHHHHHFNNNNSGDINLPPGFRFHPTDEELITYYLLKKVLDNTFSAGRAIVEVDLNKCEPWELPAEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLDGKFAYHYLSRSSKDEWVISRVFQKNNTSGGGSTVSATTTASKKTMRTSTSSTTMSLCPEPGSPSSIYLPPLLESSPYTPTTATSSAAAYNDRESCSFDSATVQREHVSCFSTISAVAADNFANAGFDFAPPQQQPPQLAVDPFSRFQRNVVGVSAFPSLRSLQENLQLPFFFSPAAAQPVHGDVAGWPVPDEHRVADGGSGMALGASELDCMWGF. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09420 366 FunFam NAC domain-containing protein 100-like 30 179 - -
Seca3g09420 366 ProSiteProfiles NAC domain profile. 21 175 IPR003441 GO:0003677|GO:0006355
Seca3g09420 366 Pfam No apical meristem (NAM) protein 22 150 IPR003441 GO:0003677|GO:0006355
Seca3g09420 366 MobiDBLite consensus disorder prediction 178 211 - -
Seca3g09420 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 236 - -
Seca3g09420 366 SUPERFAMILY NAC domain 8 175 IPR036093 GO:0003677|GO:0006355
Seca3g09420 366 Gene3D NAC domain 30 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09420 Seca-Chr3 234416851 234419445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09420 1 322 NAC Transcription Factor Family AT5G53950 57.227 1.75e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g09420 NAM 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09420 - - gmx:100788671 495.352