Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09415 ATGGCTCCGAGGGATAGACCCACCACCGTTCTCACCAACCTTGCCAAAGAGATCCGATACAGAGGAGTTAGAAAAAGACCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGGAAGAAAACTCGCGTCTGGCTAGGCACATTCGACACCGCCGAGGAGGCTGCGCGTGCGTACGATGCAGCGGCGCGTCAGTTTCGTGGCGCGAAGGCGAAGACCAATTTTCCCACACCGTCGGAGCTCACGAACAGCTCCGCGCGCAGTCCCAGCCAAAGCAGCACCCTCGAGTCCTCTTCTCCGCCGCCTCTGGACCTCACTCTCACCCCGCTCTCCTCTGCCGCCTCCGGCACGGTGGTATTCCCAGCGTCTCGCCCGCTGATATTCTTCGACGCATTCGCTCCGGCTGAGAGGAGCCGTCCGGTGGTCAGTTTCCACCGCGTACCCGGAGCACCGAGCGACTCCGATTCGTCCTCCGTCGTAGACTACGAACGGGTCCCACATCGAAGACTGTTGGATCTTGACCTTAACGTTCCTCCTCCGCCGGAGGTTGCCTGA 555 0.618 MAPRDRPTTVLTNLAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARQFRGAKAKTNFPTPSELTNSSARSPSQSSTLESSSPPPLDLTLTPLSSAASGTVVFPASRPLIFFDAFAPAERSRPVVSFHRVPGAPSDSDSSSVVDYERVPHRRLLDLDLNVPPPPEVA. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09415 184 CDD AP2 19 76 IPR001471 GO:0003700|GO:0006355
Seca3g09415 184 MobiDBLite consensus disorder prediction 70 108 - -
Seca3g09415 184 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Seca3g09415 184 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Seca3g09415 184 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca3g09415 184 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Seca3g09415 184 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Seca3g09415 184 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 158 - -
Seca3g09415 184 MobiDBLite consensus disorder prediction 75 108 - -
Seca3g09415 184 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Seca3g09415 184 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca3g09415 184 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09415 Seca-Chr3 234365304 234365858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09415 8 148 AP2-EREBP Transcription Factor Family AT3G15210 57.407 2.17e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g09415 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09415 K09286 - gmx:100785455 196.438